LXL04_012665 | RubberDandelionOmics

Gene overview

LXL04_012665

Reference: OH-1004 Chr: Chr03 Coordinates: 16463965-16464537 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

573 bp · LXL04_012665|LXL04_012665|OH1004|cDNA

ATGGCGATGTGTGTGTTTACCACTCACAACATGAACATGAAGAACCACCAAAACCCTAATTCTGGGTCCAAAACCAGAGGATCAAAATACACTGGCCAATCCATAAAACCACTCCCGATCCACATCCTTACAGTCGGCAAAACCAGATCGCCAGGAGTCCAATTGATAGTGAAGGACTACATGGAGAAACTCAAACCCTACTGCCCAATTCATGACCTCCGAATCCGATCAAACCCCAAGAACTCAACCGACGCAAGAGT...

CDS

Download CDS FASTA

573 bp · LXL04_012665|LXL04_012665|OH1004|CDS

ATGGCGATGTGTGTGTTTACCACTCACAACATGAACATGAAGAACCACCAAAACCCTAATTCTGGGTCCAAAACCAGAGGATCAAAATACACTGGCCAATCCATAAAACCACTCCCGATCCACATCCTTACAGTCGGCAAAACCAGATCGCCAGGAGTCCAATTGATAGTGAAGGACTACATGGAGAAACTCAAACCCTACTGCCCAATTCATGACCTCCGAATCCGATCAAACCCCAAGAACTCAACCGACGCAAGAGT...

Protein

Download Protein FASTA

190 aa · LXL04_012665|LXL04_012665|OH1004|PROTEIN

MAMCVFTTHNMNMKNHQNPNSGSKTRGSKYTGQSIKPLPIHILTVGKTRSPGVQLIVKDYMEKLKPYCPIHDLRIRSNPKNSTDARVQIENEEIGFMNFIKPDDWVVMMDENGMDLRSEDMADLIGDASGCSRLVFCIGGAYGHGMKVRERANVSVKLSSLVLNHEIALVVLIEQLYRAWTILKGQKYHH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012665`
TK1151 ID	TkA02G546640
OH-1004 ID	LXL04_012665
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012665

Location Chr03:16463965-16464537 (+)

Description Similar to At5g10620: Putative RNA methyltransferase At5g10620

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10620`	Putative RNA methyltransferase At5g10620.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012665 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0070475 rRNA base methylation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0070038 rRNA (pseudouridine-N3-)-methyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G10620

fps:FP1860

gau:GAU_1595

gfo:GFO_1101

mxa:MXAN_1239

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.439

Rank 1 · LXL04_012665 · OH-1004

Plastid0.361

Rank 2 · LXL04_012665 · OH-1004

Nucleus0.146

Rank 3 · LXL04_012665 · OH-1004

Cytoplasm0.061

Rank 4 · LXL04_012665 · OH-1004

Peroxisome0.019

Rank 5 · LXL04_012665 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02590.23SPOUT_MTase40-189 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012665	`PF02590.23`	SPOUT_MTase	40	189	3e-41	141.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LXB4`	Arabidopsis thaliana	Putative RNA methyltransferase At5g10620	55.959%	Swiss-Prot	strong database homology

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