LXL04_012569 | RubberDandelionOmics

Gene overview

LXL04_012569

Reference: OH-1004 Chr: Chr03 Coordinates: 14772408-14780521 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

7407 bp · LXL04_012569|LXL04_012569|OH1004|cDNA

ATGAACCGAGTCTCACAACGTTCTAACCCGTTAACCCGGCCGCTTGCAATATTTATTCTTTCTAGCAGAGTTGTACGGTACAACGGTCTAAGGCACACGCTTGGAGGTCTTCAGTCTCGTCTATGTTCTCGTTATACCCTTCCTAAACCCCTGAGTTTCTCCCTCACCAATCGCCGCCACGGCTGCTCTGCCTCAACTCCTCAACCCACCGGTCTTTTCGACGCCCAAACTTTGAACTCACACTATGTTTGGTGTTTTGT...

CDS

Download CDS FASTA

7407 bp · LXL04_012569|LXL04_012569|OH1004|CDS

ATGAACCGAGTCTCACAACGTTCTAACCCGTTAACCCGGCCGCTTGCAATATTTATTCTTTCTAGCAGAGTTGTACGGTACAACGGTCTAAGGCACACGCTTGGAGGTCTTCAGTCTCGTCTATGTTCTCGTTATACCCTTCCTAAACCCCTGAGTTTCTCCCTCACCAATCGCCGCCACGGCTGCTCTGCCTCAACTCCTCAACCCACCGGTCTTTTCGACGCCCAAACTTTGAACTCACACTATGTTTGGTGTTTTGT...

Protein

Download Protein FASTA

2468 aa · LXL04_012569|LXL04_012569|OH1004|PROTEIN

MNRVSQRSNPLTRPLAIFILSSRVVRYNGLRHTLGGLQSRLCSRYTLPKPLSFSLTNRRHGCSASTPQPTGLFDAQTLNSHYVWCFVLCILAAMENDEAMNLESQKFPTFVMKVSHEAKLRELLRNITSIDLQLCSEASKEFMKLLRGDEGGEMLRQYVQTSPGCSELLQAWNLRQSKPGLSYIMSLINAILSHKDGVYKPNDVARVPLSRALDKFARFILEEKLGDVYKELNNKEGKGKHAALLLMASIVKRGSGLASD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012569`
TK1151 ID	TkA02G552660
OH-1004 ID	LXL04_012569
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 96.232 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_012569`
Location	Chr03:14772408-14780521 (-)
Description	Similar to Urb1: Nucleolar pre-ribosomal-associated protein 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_012569` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0001650 fibrillar center Cellular Component GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005829 cytosol Cellular Component GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference	hsa:9875 mmu:207932 spo:2539162 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.692

Rank 1 · LXL04_012569 · OH-1004

Cytoplasm0.258

Rank 2 · LXL04_012569 · OH-1004

Endoplasmic reticulum0.055

Rank 3 · LXL04_012569 · OH-1004

Cell membrane0.054

Rank 4 · LXL04_012569 · OH-1004

Golgi apparatus0.049

Rank 5 · LXL04_012569 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11707.14Npa1165-468 aa

PF16201.11NopRA11925-2114 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012569	`PF11707.14`	Npa1	165	468	4.9e-47	161.5
LXL04_012569	`PF16201.11`	NopRA1	1925	2114	2.9e-46	158.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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