LXL04_012560 | RubberDandelionOmics

Gene overview

LXL04_012560

Reference: OH-1004 Chr: Chr03 Coordinates: 14602694-14606914 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1995 bp · LXL04_012560|LXL04_012560|OH1004|cDNA

GTGAGATTTCTAGACTACAACACACGTGCACTGCACGCTGGTTTGGCTGTTCTGCTGTTCTGCATCGCCTTCTACTTCTTCCCCTAAGCTTCTCCGCCCATTTTTCATCTCTTTCTCCCCCCTCTCAAACACACAGACAGAGCATCTGTGATAATGGCAGCTATGATGGGGAAAACTGTTCAAAATATACCGAGTGCAAATTGCTGCCAGCAAAATAGGCAGTTGTGCACCCAATATCAAAGGGACCCATGTGTCCAATA...

CDS

Download CDS FASTA

1842 bp · LXL04_012560|LXL04_012560|OH1004|CDS

ATGGCAGCTATGATGGGGAAAACTGTTCAAAATATACCGAGTGCAAATTGCTGCCAGCAAAATAGGCAGTTGTGCACCCAATATCAAAGGGACCCATGTGTCCAATATAAACACAACTTGCCTCTCTTTCAAGGAAGGAAGTTGGCATGGAGGGGCATCTCAACCATGCAATCTTTTAATGTGTCAAACATTAAACAAGGAGTTGTTTACTGCAATGCTGCTTTATCAGCTACTGCAGTACCATCACTTGAAAATGTAAA...

Protein

Download Protein FASTA

613 aa · LXL04_012560|LXL04_012560|OH1004|PROTEIN

MAAMMGKTVQNIPSANCCQQNRQLCTQYQRDPCVQYKHNLPLFQGRKLAWRGISTMQSFNVSNIKQGVVYCNAALSATAVPSLENVNFLKLQNGSDIRGVAVEGVVGEPLNLTESVTEAIAAAFASWLLDKKKADSSTPLKISIGHDSRISAQKLQDAASRGIASVGFDVVQYGLASTPAMFNSTLTKNKDILCPVDGAIMITASHLPYNRNGFKFFTNEGGLGKPDIKDILERAANIYKGFTPESLKEAERKASSSITK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012560`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_012560`
Location	Chr03:14602694-14606914 (-)
Description	Similar to algC: Phosphomannomutase/phosphoglucomutase (Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_012560` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006006 glucose metabolic process Biological Process GO:0009298 GDP-mannose biosynthetic process Biological Process GO:0042121 alginic acid biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0000287 magnesium ion binding Molecular Function GO:0004614 phosphoglucomutase activity Molecular Function GO:0004615 phosphomannomutase activity Molecular Function
KEGG gene cross-reference	nma:NMA1001 nme:NMB0790 ppu:PP_5288 pst:PSPTO_0083 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.931

Rank 1 · LXL04_012560 · OH-1004

Mitochondrion0.091

Rank 2 · LXL04_012560 · OH-1004

Cytoplasm0.045

Rank 3 · LXL04_012560 · OH-1004

Nucleus0.020

Rank 4 · LXL04_012560 · OH-1004

Peroxisome0.020

Rank 5 · LXL04_012560 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02878.23PGM_PMM_I93-236 aa

PF02879.24PGM_PMM_II286-372 aa

PF02880.23PGM_PMM_III377-483 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012560	`PF02878.23`	PGM_PMM_I	93	236	9.4e-26	90.9
LXL04_012560	`PF02879.24`	PGM_PMM_II	286	372	6.8e-21	75.3
LXL04_012560	`PF02880.23`	PGM_PMM_III	377	483	1.2e-10	42.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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