LXL04_012398 | RubberDandelionOmics

Gene overview

LXL04_012398

Reference: OH-1004 Chr: Chr03 Coordinates: 11566655-11571136 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2169 bp · LXL04_012398|LXL04_012398|OH1004|cDNA

ATGGCGGCGATCGATCCAACTCGTGGTTTCCTTAAAGATGTTAAGCGTATCGTAATCAAGGTTGGGACAGCTGTCGTCACCCGAGAGGACGGAAGGCTTGCGCTCGGAAGACTCGGAGCTCTCTGTGAGCAGattcaaatactaaattctCAAGGATTTGAGGTGATCTTGGTCTCATCAGGTGCTGTTGGTGCAGGTAGACAACGTCTCAGATACAGGAAATTAGTCCACAGCAGCTTTGCGGACCTTCAAAAGCCACA...

CDS

Download CDS FASTA

2169 bp · LXL04_012398|LXL04_012398|OH1004|CDS

ATGGCGGCGATCGATCCAACTCGTGGTTTCCTTAAAGATGTTAAGCGTATCGTAATCAAGGTTGGGACAGCTGTCGTCACCCGAGAGGACGGAAGGCTTGCGCTCGGAAGACTCGGAGCTCTCTGTGAGCAGATTCAAATACTAAATTCTCAAGGATTTGAGGTGATCTTGGTCTCATCAGGTGCTGTTGGTGCAGGTAGACAACGTCTCAGATACAGGAAATTAGTCCACAGCAGCTTTGCGGACCTTCAAAAGCCACA...

Protein

Download Protein FASTA

722 aa · LXL04_012398|LXL04_012398|OH1004|PROTEIN

MAAIDPTRGFLKDVKRIVIKVGTAVVTREDGRLALGRLGALCEQIQILNSQGFEVILVSSGAVGAGRQRLRYRKLVHSSFADLQKPQVELDGKACAAVGQNGLMALYDTLFSQLDVTSAQLLVTDNDFRSPEFRKQLTETVDSLLSYKVIPVFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVDGLYSGPPSDPQSKLIYTYIKEKLENTITFGDKSRLGRGGMTAKVKAAVYASQAGIPVIITS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012398`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012398

Location Chr03:11566655-11571136 (-)

Description Similar to Delta-1-pyrroline-5-carboxylate synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55610`	P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants.	No verified direct reference in this release
`At2g39800`	P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0455500`	P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012398 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009269 response to desiccation Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009555 pollen development Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0048364 root development Biological Process

GO:0055129 L-proline biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT2G39800

ath:AT3G55610

dosa:Os05g0455500

osa:4338979

sly:544281

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.690

Rank 1 · LXL04_012398 · OH-1004

Nucleus0.308

Rank 2 · LXL04_012398 · OH-1004

Mitochondrion0.102

Rank 3 · LXL04_012398 · OH-1004

Peroxisome0.073

Rank 4 · LXL04_012398 · OH-1004

Cell membrane0.059

Rank 5 · LXL04_012398 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00696.34AA_kinase15-260 aa

PF00171.28Aldedh294-558 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012398	`PF00696.34`	AA_kinase	15	260	3.3e-39	135.7
LXL04_012398	`PF00171.28`	Aldedh	294	558	8.1e-11	41.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P54888`	Arabidopsis thaliana	Delta-1-pyrroline-5-carboxylate synthase B	75.456%	Swiss-Prot	strong database homology
`P54887`	Arabidopsis thaliana	Delta-1-pyrroline-5-carboxylate synthase A	75.035%	Swiss-Prot	strong database homology
`O04226`	Oryza sativa subsp. japonica	Delta-1-pyrroline-5-carboxylate synthase 1	75.175%	Swiss-Prot	strong database homology

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