Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1314 bp · LXL04_012270|LXL04_012270|OH1004|cDNA
ATGGATGAGGGAATGTCAGGTTTTGGTCTGAAACCTACCCGCGGTGGCAGTGGCGCCGGTGGTGCAAAGTGTGGCCGGTGGAACCCAACCAACGAACAAGTCAAAGTGTTGACCGACTTGTTCCGATCGGGTTTACGAACCCCAAGCACTGACCAGATTCAAAAGATTTCTTCCCAGTTGAGTTTTTATGGGAAGATCGAGAGCAAGAATGTTTTTTACTGGTTTCAGAACCATAAAGCTAGGGAACGACAAAAACGCCG...
1314 bp · LXL04_012270|LXL04_012270|OH1004|CDS
ATGGATGAGGGAATGTCAGGTTTTGGTCTGAAACCTACCCGCGGTGGCAGTGGCGCCGGTGGTGCAAAGTGTGGCCGGTGGAACCCAACCAACGAACAAGTCAAAGTGTTGACCGACTTGTTCCGATCGGGTTTACGAACCCCAAGCACTGACCAGATTCAAAAGATTTCTTCCCAGTTGAGTTTTTATGGGAAGATCGAGAGCAAGAATGTTTTTTACTGGTTTCAGAACCATAAAGCTAGGGAACGACAAAAACGCCG...
Protein
Download Protein FASTA437 aa · LXL04_012270|LXL04_012270|OH1004|PROTEIN
MDEGMSGFGLKPTRGGSGAGGAKCGRWNPTNEQVKVLTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKRRRVYVEYDQNDHNVAKQHFAEVTETEKVIETLQLFPVNSLAFDQEKGRVFTNDECKENTSPYTTSPNSSKNRHDAIKYTVHLLRELNLSSVSLAANNHRRSILYCPYLSCKKGGVKNPGFPYLSESKLNLTCVWDRCKLKTNDAAKEFEKMEEGGVVVPESVTEAVNRTSNNFQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012270 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012270 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:9535407-9538364 (-) | |||||||||
| Description | Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0008652 amino acid biosynthetic process Biological Process GO:0009073 aromatic amino acid family biosynthetic process Biological Process GO:0009423 chorismate biosynthetic process Biological Process GO:0009733 response to auxin Biological Process GO:0010078 maintenance of root meristem identity Biological Process GO:1902459 positive regulation of stem cell population maintenance Biological Process GO:0005634 nucleus Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0009534 chloroplast thylakoid Cellular Component GO:0003700 DNA-binding transcription factor activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G11260 ath:AT4G33510 nta:107775732 sly:544153 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00046.36Homeodomain24-84 aaPF01474.23DAHP_synth_2291-390 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_012270 | PF00046.36 | Homeodomain | 24 | 84 | 4.4e-14 | 52.7 |
| LXL04_012270 | PF01474.23 | DAHP_synth_2 | 291 | 390 | 2e-34 | 119.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.