Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_012270 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:9535407-9538364 (-) |
| Description | Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2%2C chloroplastic (Solanum lycopersicum OX%3D4081) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_012270 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 15 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g33510 |
Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic. | No verified direct reference in this release |
At3g11260 |
Transcription factor, which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.442; coverage=35.24; evalue=8.38e-50; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008652 | amino acid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.048; coverage=24.027; evalue=1.91e-51; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009073 | aromatic amino acid family biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.048; coverage=24.027; evalue=1.91e-51; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009423 | chorismate biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.048; coverage=24.027; evalue=1.91e-51; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009733 | response to auxin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.442; coverage=35.24; evalue=8.38e-50; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010078 | maintenance of root meristem identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.442; coverage=35.24; evalue=8.38e-50; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902459 | positive regulation of stem cell population maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.442; coverage=35.24; evalue=8.38e-50; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.442; coverage=35.24; evalue=8.38e-50; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=78.218; coverage=23.112; evalue=6.92e-50; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.048; coverage=24.027; evalue=1.91e-51; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009534 | chloroplast thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=78.218; coverage=23.112; evalue=6.92e-50; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.442; coverage=35.24; evalue=8.38e-50; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003849 | 3-deoxy-7-phosphoheptulonate synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.048; coverage=24.027; evalue=1.91e-51; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.442; coverage=35.24; evalue=8.38e-50; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.048; coverage=24.027; evalue=1.91e-51; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G11260 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.442; coverage=35.24; evalue=8.38e-50 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G33510 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=78.218; coverage=23.112; evalue=6.92e-50 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | nta:107775732 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=81.188; coverage=23.112; evalue=1.14e-50 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sly:544153 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.048; coverage=24.027; evalue=1.91e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release |