LXL04_011937 | RubberDandelionOmics

Gene overview

LXL04_011937

Reference: OH-1004 Chr: Chr03 Coordinates: 3154665-3174246 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

930 bp · LXL04_011937|LXL04_011937|OH1004|cDNA

ATGGGTTTGCAATGGGTTCGGTTTCACGGTTTCATGGGGCGGTTTCACGGTTTCATGGGTTTTTGGGTGCAACCCATGGGATTTGGGTTTGGGTTTAAACTCAAGAGAATTTATGACCACCACCCTTATTATCAGCAActtcttcatcatctccaaCATCAATATCAACAATCGCAAAGAGGCCGACATTGGGCTAATCAAACTGAAATTAAAACGAAAATCACTGAAATTAACTTGCATCTAACCTGCGGTGTTGCTGC...

CDS

Download CDS FASTA

930 bp · LXL04_011937|LXL04_011937|OH1004|CDS

ATGGGTTTGCAATGGGTTCGGTTTCACGGTTTCATGGGGCGGTTTCACGGTTTCATGGGTTTTTGGGTGCAACCCATGGGATTTGGGTTTGGGTTTAAACTCAAGAGAATTTATGACCACCACCCTTATTATCAGCAACTTCTTCATCATCTCCAACATCAATATCAACAATCGCAAAGAGGCCGACATTGGGCTAATCAAACTGAAATTAAAACGAAAATCACTGAAATTAACTTGCATCTAACCTGCGGTGTTGCTGC...

Protein

Download Protein FASTA

309 aa · LXL04_011937|LXL04_011937|OH1004|PROTEIN

MGLQWVRFHGFMGRFHGFMGFWVQPMGFGFGFKLKRIYDHHPYYQQLLHHLQHQYQQSQRGRHWANQTEIKTKITEINLHLTCGVAAVLLWWSTVGEEGSMKTPVGVAEMKVVIERTGGLVVLAESFGRSVFKDSFRRVFKKGEESLGLSHNGTLEINCREHNDWTGEHKDVLSKSRRHGEEYPKHPYFDSDCMFPVVFVYWGHDFRINYKNLRIEESISHVPVVALFLTDWVVMQRYYFGTNQKGKMDNHYGTEGIHIY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011937`
TK1151 ID	TkA05G281180
OH-1004 ID	LXL04_011937
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	92.900
Protein coverage (%)	TK1151 35.897 / OH-1004 22.654 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011937

Location Chr03:3154665-3174246 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g05520`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER) (By similarity).	No verified direct reference in this release
`At3g23660`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER).	No verified direct reference in this release
`At4g14160`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER).	No verified direct reference in this release
`At2g21630`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER) (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011937 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0003400 regulation of COPII vesicle coating Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0061709 reticulophagy Biological Process

GO:0070863 positive regulation of protein exit from endoplasmic reticulum Biological Process

GO:0090110 COPII-coated vesicle cargo loading Biological Process

GO:1902953 positive regulation of ER to Golgi vesicle-mediated transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0030127 COPII vesicle coat Cellular Component

KEGG gene cross-reference

ath:AT1G05520

ath:AT2G21630

ath:AT3G23660

ath:AT4G14160

dha:DEHA2E02332g

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.405

Rank 1 · LXL04_011937 · OH-1004

Nucleus0.385

Rank 2 · LXL04_011937 · OH-1004

Mitochondrion0.160

Rank 3 · LXL04_011937 · OH-1004

Cell membrane0.113

Rank 4 · LXL04_011937 · OH-1004

Endoplasmic reticulum0.073

Rank 5 · LXL04_011937 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8H0S3`	Arabidopsis thaliana	Protein transport protein SEC23 B	77.193%	Swiss-Prot	weak database homology
`Q9LUG1`	Arabidopsis thaliana	Protein transport protein SEC23 E	73.684%	Swiss-Prot	weak database homology
`Q8VXX0`	Arabidopsis thaliana	Protein transport protein SEC23 F	75.439%	Swiss-Prot	weak database homology
`Q9SIJ7`	Arabidopsis thaliana	Protein transport protein SEC23 C	63.158%	Swiss-Prot	weak database homology

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