LXL04_011815 | RubberDandelionOmics

Gene overview

LXL04_011815

Reference: OH-1004 Chr: Chr03 Coordinates: 798220-800826 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1430 bp · LXL04_011815|LXL04_011815|OH1004|cDNA

CTAAGATAATCTAATCCGTTAAACCAGTTAGAGGTCAGCGTTTGCGCTCATGATGTCTTATCTTTGGAAGGCTCACCTCACTGGCTCGCTCACACTTATTATTATATACCCATTTCTACTTGACACTTATTCTTCTTGCAAACTACATCTACTTGATCTCATCAATGGCTTTATGGAGTCCTCGCTTGCAAAGATTTCTACTCAACAACAACGTAAGCAAGATCGACTTGAAGAGGACTAATAGTTATAATAGCAATAAT...

CDS

Download CDS FASTA

1350 bp · LXL04_011815|LXL04_011815|OH1004|CDS

CTGGCTCGCTCACACTTATTATTATATACCCATTTCTACTTGACACTTATTCTTCTTGCAAACTACATCTACTTGATCTCATCAATGGCTTTATGGAGTCCTCGCTTGCAAAGATTTCTACTCAACAACAACGTAAGCAAGATCGACTTGAAGAGGACTAATAGTTATAATAGCAATAATCATATAATTATGAGAAAGTGGAGTAGAGAAGGCAGCCCCCGGTGTTGTTCGGCGATTGCAATCGACGCCCCTTCTTCTCT...

Protein

Download Protein FASTA

449 aa · LXL04_011815|LXL04_011815|OH1004|PROTEIN

MARSHLLLYTHFYLTLILLANYIYLISSMALWSPRLQRFLLNNNVSKIDLKRTNSYNSNNHIIMRKWSREGSPRCCSAIAIDAPSSLSDGLSGIRWGSAKLQGAREEMEDDAVIVAHNELDGFYFAAVFDGHAGFSSVKFLREELYKECVKALQGGLLLSKKDMNGIKKALQEAFENADAKLLNWLDMNGEEDESGATATTLLVGNNMLFISHVGDSCAVLSVSGKAQELTDSHRPYGRSKVSLKEIKRIREAGGWISDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011815`
TK1151 ID	TkA02G611640
OH-1004 ID	LXL04_011815
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.300
Protein coverage (%)	TK1151 100.000 / OH-1004 93.764 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011815

Location Chr03:798220-800826 (-)

Description Similar to PPH1: Protein phosphatase 2C 57

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g27800`	Protein phosphatase specifically required for efficient dephosphorylation of the light-harvesting complex II outer antennae (LCHII) and transition from state 2 to state 1.	Role of plastid protein phosphatase TAP38 in LHCII dephosphorylation and thylakoid electron flow.2010 · DOI: 10.1371/journal.pbio.1000288 The PPH1 phosphatase is specifically involved in LHCII dephosphorylation and state transitions in Arabidopsis.2010 · DOI: 10.1073/pnas.0913810107
`At3g51470`	Probable protein phosphatase 2C 47.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0552300`	Probable protein phosphatase 2C 5.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011815 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006470 protein dephosphorylation Biological Process

GO:0006499 N-terminal protein myristoylation Biological Process

GO:0007165 signal transduction Biological Process

GO:0009767 photosynthetic electron transport chain Biological Process

GO:0016311 dephosphorylation Biological Process

GO:0032688 negative regulation of interferon-beta production Biological Process

GO:0035970 peptidyl-threonine dephosphorylation Biological Process

GO:0043122 regulation of canonical NF-kappaB signal transduction Biological Process

GO:0043124 negative regulation of canonical NF-kappaB signal transduction Biological Process

GO:0050687 negative regulation of defense response to virus Biological Process

GO:0080005 photosystem stoichiometry adjustment Biological Process

GO:0090263 positive regulation of canonical Wnt signaling pathway Biological Process

KEGG gene cross-reference

ath:AT3G51470

ath:AT4G27800

cel:CELE_T23F11.1

dosa:Os01g0552300

mmu:19043

osa:4325851

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.904

Rank 1 · LXL04_011815 · OH-1004

Mitochondrion0.052

Rank 2 · LXL04_011815 · OH-1004

Cytoplasm0.039

Rank 3 · LXL04_011815 · OH-1004

Nucleus0.038

Rank 4 · LXL04_011815 · OH-1004

Cell membrane0.032

Rank 5 · LXL04_011815 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C97-377 aa

PF13672.12PP2C_2108-366 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011815	`PF00481.27`	PP2C	97	377	1e-52	180.1
LXL04_011815	`PF13672.12`	PP2C_2	108	366	5.5e-06	26.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P49599`	Arabidopsis thaliana	Protein phosphatase 2C 57	56.471%	Swiss-Prot	strong database homology
`Q9SD02`	Arabidopsis thaliana	Probable protein phosphatase 2C 47	30.864%	Swiss-Prot	moderate database homology
`Q5JKN1`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 5	54.545%	Swiss-Prot	strong database homology

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