LXL04_010461 | RubberDandelionOmics

Gene overview

LXL04_010461

Reference: OH-1004 Chr: Chr02 Coordinates: 147072156-147074677 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1050 bp · LXL04_010461|LXL04_010461|OH1004|cDNA

ATGGAATTTCAAAAACCAATCGTCGTTGCATTCTTGCTATCAACCCTAATACTCACCGCATTTGCTGATTGTACTTGTGATCTTGAAGAAAACAACGGCAACGATAGCACAGTTCTGAAGTACAAACTGATCGCACTTGCTTGCATTCTCATAGCCGGCGGCATCGGCGTTTCTCTTCCCTTCGCAGGCAATATTTTCCAGGCGCTACGCCCTGAGAATGACAGTTTCTTCTTGGTGAAAGCCTTTGCCTCCGGCGTGAT...

CDS

Download CDS FASTA

1050 bp · LXL04_010461|LXL04_010461|OH1004|CDS

ATGGAATTTCAAAAACCAATCGTCGTTGCATTCTTGCTATCAACCCTAATACTCACCGCATTTGCTGATTGTACTTGTGATCTTGAAGAAAACAACGGCAACGATAGCACAGTTCTGAAGTACAAACTGATCGCACTTGCTTGCATTCTCATAGCCGGCGGCATCGGCGTTTCTCTTCCCTTCGCAGGCAATATTTTCCAGGCGCTACGCCCTGAGAATGACAGTTTCTTCTTGGTGAAAGCCTTTGCCTCCGGCGTGAT...

Protein

Download Protein FASTA

349 aa · LXL04_010461|LXL04_010461|OH1004|PROTEIN

MEFQKPIVVAFLLSTLILTAFADCTCDLEENNGNDSTVLKYKLIALACILIAGGIGVSLPFAGNIFQALRPENDSFFLVKAFASGVILATGFIHILPDAFESLTSPCLKEHPWGDFPFTGFVAMVATILTLLIETSASAYQLKVQTEVAAKLVGVEDEEKNAGNVDVHMHANNHGHVHGFMLPPVNDSEVHRYRIVSQVLELGIIVHSVIIGLSLGASKSPETIKPLIIALSFHQFFEGLGLGGCIYQAKIKSLAITLMG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010461`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010461

Location Chr02:147072156-147074677 (+)

Description Similar to ZIP5: Zinc transporter 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g05300`	Probably mediates zinc uptake from the rhizosphere.	No verified direct reference in this release
`At3g12750`	Mediates zinc uptake from the rhizosphere.	No verified direct reference in this release
`At2g32270`	Mediates zinc uptake from the rhizosphere.	No verified direct reference in this release
`At5g62160`	Zinc transporter involved in zinc uptake in roots.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0472700`	Zinc transporter that mediates zinc uptake from the rhizosphere and may be responsible for the translocation of zinc within the plant.	OsZIP5 is a plasma membrane zinc transporter in rice.2010 · DOI: 10.1007/s11103-010-9637-0

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010461 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006829 zinc ion transport Biological Process

GO:0071577 zinc ion transmembrane transport Biological Process

GO:1990359 stress response to zinc ion Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005385 zinc ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G05300

ath:AT2G32270

ath:AT3G12750

ath:AT5G62160

dosa:Os05g0472700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.687

Rank 1 · LXL04_010461 · OH-1004

Lysosome / Vacuole0.115

Rank 2 · LXL04_010461 · OH-1004

Endoplasmic reticulum0.113

Rank 3 · LXL04_010461 · OH-1004

Cytoplasm0.065

Rank 4 · LXL04_010461 · OH-1004

Golgi apparatus0.040

Rank 5 · LXL04_010461 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02535.29Zip40-346 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010461	`PF02535.29`	Zip	40	346	7.6e-75	252.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23039`	Arabidopsis thaliana	Zinc transporter 5	53.134%	Swiss-Prot	strong database homology
`O81123`	Arabidopsis thaliana	Zinc transporter 1	53.582%	Swiss-Prot	strong database homology
`Q9SLG3`	Arabidopsis thaliana	Zinc transporter 3	53.211%	Swiss-Prot	strong database homology
`Q9FIS2`	Arabidopsis thaliana	Probable zinc transporter 12	51.532%	Swiss-Prot	strong database homology
`Q6L8G0`	Oryza sativa subsp. japonica	Zinc transporter 5	49.148%	Swiss-Prot	moderate database homology

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