Gene Card
Gene overview
cDNA / CDS / Protein Sequences
435 bp · LXL04_010290|LXL04_010290|OH1004|cDNA
ATGCAAGCTTCCATCTACTTCCCTTCGTCATCACCGTTCCTCTCTTTGCCATCTGCCAAATCCTCAAGTTTCTCCAAGCCATTGTTCTATCCTACTCCTAGTAAACGTCAATTTGGTCAAGCATCGACATCGCTCCCAGTTATCAAAGCACAAACCTCCGAATATTCTCAGATCGATTACAACTCCATGGCCTCATCAGTTTTCCCAGCAGAAGCATGCGAGACTATCGGTGGTGTGGCTTGTGACGTTGATATGTTCCC...
435 bp · LXL04_010290|LXL04_010290|OH1004|CDS
ATGCAAGCTTCCATCTACTTCCCTTCGTCATCACCGTTCCTCTCTTTGCCATCTGCCAAATCCTCAAGTTTCTCCAAGCCATTGTTCTATCCTACTCCTAGTAAACGTCAATTTGGTCAAGCATCGACATCGCTCCCAGTTATCAAAGCACAAACCTCCGAATATTCTCAGATCGATTACAACTCCATGGCCTCATCAGTTTTCCCAGCAGAAGCATGCGAGACTATCGGTGGTGTGGCTTGTGACGTTGATATGTTCCC...
Protein
Download Protein FASTA144 aa · LXL04_010290|LXL04_010290|OH1004|PROTEIN
MQASIYFPSSSPFLSLPSAKSSSFSKPLFYPTPSKRQFGQASTSLPVIKAQTSEYSQIDYNSMASSVFPAEACETIGGVACDVDMFPETKIKQQPDPKRYPPPTSQPIDREYLEYNSSKTVFIAEACDDLGGEFCEPAYQSGIN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_010290 |
|---|---|
| TK1151 ID | TkA03G517430 |
| OH-1004 ID | LXL04_010290 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_010290 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:143772744-143773338 (-) | ||||||||||||
| Description | Similar to LIR1: Light-regulated protein 1, chloroplastic | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0007623 circadian rhythm Biological Process GO:0071482 cellular response to light stimulus Biological Process GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0009941 chloroplast envelope Cellular Component GO:0098807 chloroplast thylakoid membrane protein complex Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT3G26740 dosa:Os01g0102900 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07207.17Lir11-136 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_010290 | PF07207.17 | Lir1 | 1 | 136 | 2.1e-38 | 132.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.