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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_010290
Query referenceOH1004
LocationChr02:143772744-143773338 (-)
DescriptionSimilar to LIR1: Light-regulated protein 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_010290 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 8 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g26740 Thylakoid-determinant subunit of high molecular weight LFNRs- containing protein complexes.
LIGHT-INDUCED RICE1 Regulates Light-Dependent Attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE to the Thylakoid Membrane in Rice and Arabidopsis.2016 · DOI: 10.1105/tpc.15.01027

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0102900 Thylakoid-determinant subunit of high molecular weight LFNRs-containing protein complexes.
LIGHT-INDUCED RICE1 Regulates Light-Dependent Attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE to the Thylakoid Membrane in Rice and Arabidopsis.2016 · DOI: 10.1105/tpc.15.01027

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0007623circadian rhythmBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.065; coverage=64.583; evalue=8.09e-31; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071482cellular response to light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=54.167; evalue=3.52e-17; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.065; coverage=64.583; evalue=8.09e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.065; coverage=64.583; evalue=8.09e-31; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=54.167; evalue=3.52e-17; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.065; coverage=64.583; evalue=8.09e-31; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.065; coverage=64.583; evalue=8.09e-31; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0098807chloroplast thylakoid membrane protein complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.065; coverage=64.583; evalue=8.09e-31; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G26740KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.065; coverage=64.583; evalue=8.09e-31UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0102900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.0; coverage=54.167; evalue=3.52e-17UniProtKB/Swiss-Prot DAT 2026 current_release