LXL04_010102 | RubberDandelionOmics

Gene overview

LXL04_010102

Reference: OH-1004 Chr: Chr02 Coordinates: 140114219-140116343 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1380 bp · LXL04_010102|LXL04_010102|OH1004|cDNA

ATGGAACCCATCTTTCTATCGCTCCTGCTTTTCCTCGTGCCTTATGCTTTTGGAGCAGAATATTCATCCTTCAATTGCATCTCCAATAAAACCACCTACACTCAAAACACTACTTACCATCTTAACCTTAATGAACTCCTGTCTTCCTTTTCCACTGAAGAAGTAGTAATCACCGATCTTTTTTCTTACAAAATCGCCGGCAGCCCTCCAGATGCCGCATACGGGCTCTATCTTTGTCGCGCGGATAAACTCCCAAATGA...

CDS

Download CDS FASTA

1380 bp · LXL04_010102|LXL04_010102|OH1004|CDS

ATGGAACCCATCTTTCTATCGCTCCTGCTTTTCCTCGTGCCTTATGCTTTTGGAGCAGAATATTCATCCTTCAATTGCATCTCCAATAAAACCACCTACACTCAAAACACTACTTACCATCTTAACCTTAATGAACTCCTGTCTTCCTTTTCCACTGAAGAAGTAGTAATCACCGATCTTTTTTCTTACAAAATCGCCGGCAGCCCTCCAGATGCCGCATACGGGCTCTATCTTTGTCGCGCGGATAAACTCCCAAATGA...

Protein

Download Protein FASTA

459 aa · LXL04_010102|LXL04_010102|OH1004|PROTEIN

MEPIFLSLLLFLVPYAFGAEYSSFNCISNKTTYTQNTTYHLNLNELLSSFSTEEVVITDLFSYKIAGSPPDAAYGLYLCRADKLPNDCRNCLITAGREITKQCPNMKQGIRWSDDCMLRYSNIPFFSKMENSPFDYVCNKGNVSKLEVEKDDFEKLVAGMMDELIIQASNHSKKYAYKSALFNAAEKVFGLLQCTQDLTGFECDQCLRSGVNRLVNELCGAKLGGRISTPSCNLRYEIYEFYKFPSSDDGLKVPSSLTKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010102`
TK1151 ID	TkA03G498280
OH-1004 ID	LXL04_010102
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.500
Protein coverage (%)	TK1151 97.357 / OH-1004 48.148 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010102

Location Chr02:140114219-140116343 (-)

Description Similar to CRK25: Cysteine-rich receptor-like protein kinase 25

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05200`	Cysteine-rich receptor-like protein kinase 25.	No verified direct reference in this release
`At4g21410`	Cysteine-rich receptor-like protein kinase 29.	No verified direct reference in this release
`At4g23280`	Putative cysteine-rich receptor-like protein kinase 20.	No verified direct reference in this release
`At4g23160`	Cysteine-rich receptor-like protein kinase 8.	No verified direct reference in this release
`At4g23230`	Cysteine-rich receptor-like protein kinase 15.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010102 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0012501 programmed cell death Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT4G05200

ath:AT4G21410

ath:AT4G23230

ath:AT4G23280

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.850

Rank 1 · LXL04_010102 · OH-1004

Endoplasmic reticulum0.087

Rank 2 · LXL04_010102 · OH-1004

Cytoplasm0.065

Rank 3 · LXL04_010102 · OH-1004

Lysosome / Vacuole0.036

Rank 4 · LXL04_010102 · OH-1004

Nucleus0.030

Rank 5 · LXL04_010102 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung26-122 aa

PF01657.23Stress-antifung138-238 aa

PF00069.32Pkinase334-459 aa

PF07714.24PK_Tyr_Ser-Thr336-459 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010102	`PF01657.23`	Stress-antifung	26	122	2.1e-34	118.8
LXL04_010102	`PF01657.23`	Stress-antifung	138	238	2.1e-34	118.8
LXL04_010102	`PF00069.32`	Pkinase	334	459	2.3e-23	83.6
LXL04_010102	`PF07714.24`	PK_Tyr_Ser-Thr	336	459	1.4e-25	90.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M0X5`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 25	41.309%	Swiss-Prot	moderate database homology
`Q8S9L6`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 29	41.434%	Swiss-Prot	moderate database homology
`O65479`	Arabidopsis thaliana	Putative cysteine-rich receptor-like protein kinase 20	44.043%	Swiss-Prot	moderate database homology
`O65468`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 8	41.791%	Swiss-Prot	moderate database homology
`Q8W4G6`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 15	41.595%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card