Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2220 bp · LXL04_009882|LXL04_009882|OH1004|cDNA
ATGGATGCGGCTTTGCTTGAGGGAGAAAGTAGTAGTCGATGGGGTGTTGCAGGAGGCCGGAGAGAATATAAACGACGGTCGGATGCCATCGCTTACGGATCGCCTTATCAGAAGGCGGCTGCTCTTGTCGATCTCGCTGAAGATGGAGCTGGTCTACCAGAGGAAATCCTTGACTTACCAAACATTGAATCTGCTGCAAAGTTCTACTTCATCTTCATTCGCTTTGACATCATATGGACCCTTAACTATTTTGCACTCAT...
2220 bp · LXL04_009882|LXL04_009882|OH1004|CDS
ATGGATGCGGCTTTGCTTGAGGGAGAAAGTAGTAGTCGATGGGGTGTTGCAGGAGGCCGGAGAGAATATAAACGACGGTCGGATGCCATCGCTTACGGATCGCCTTATCAGAAGGCGGCTGCTCTTGTCGATCTCGCTGAAGATGGAGCTGGTCTACCAGAGGAAATCCTTGACTTACCAAACATTGAATCTGCTGCAAAGTTCTACTTCATCTTCATTCGCTTTGACATCATATGGACCCTTAACTATTTTGCACTCAT...
Protein
Download Protein FASTA739 aa · LXL04_009882|LXL04_009882|OH1004|PROTEIN
MDAALLEGESSSRWGVAGGRREYKRRSDAIAYGSPYQKAAALVDLAEDGAGLPEEILDLPNIESAAKFYFIFIRFDIIWTLNYFALIALNFFEKPLWCTSVSEVTCSDREYYYLGELPYLTNAESLAFEGVTLIILVVHTLFPILYEGGQLYWKSHVNKLKIISLLILVADLIVDIIYLSPVAIYSLPLRIAPYIRVVFFILNIRDLRDSMVVLAGMLSTYLNVLALFFLFLVFSSWLAYVIFEDTQQGTAIFMSYPATL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009882 |
|---|---|
| TK1151 ID | TkA03G479920 |
| OH-1004 ID | LXL04_009882 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009882 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:135315602-135320546 (-) | ||||||||||||
| Description | Similar to TPC1A: Two pore calcium channel protein 1A | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006816 calcium ion transport Biological Process GO:0006952 defense response Biological Process GO:0009845 seed germination Biological Process GO:0010119 regulation of stomatal movement Biological Process GO:0019722 calcium-mediated signaling Biological Process GO:0080141 regulation of jasmonic acid biosynthetic process Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005773 vacuole Cellular Component GO:0005774 vacuolar membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT4G03560 dosa:Os01g0678500 nta:107770546 nta:107819477 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00520.38Ion_trans128-314 aaPF00520.38Ion_trans435-679 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_009882 | PF00520.38 | Ion_trans | 128 | 314 | 1.4e-55 | 188.9 |
| LXL04_009882 | PF00520.38 | Ion_trans | 435 | 679 | 1.4e-55 | 188.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.