LXL04_009665 | RubberDandelionOmics

Gene overview

LXL04_009665

Reference: OH-1004 Chr: Chr02 Coordinates: 130905293-130911959 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2487 bp · LXL04_009665|LXL04_009665|OH1004|cDNA

ATGGTGGTGTCAATGATGACCAGTACCGTACCTTTTTGTCCTATTTGTGGTTTGGAAGATGAGCAATTGGGGCACTTGTTCGGCCAATGTGAAGTTGCAGCTAGGACGTGGAGTGTGATTTTTAGGTGGCTTGGTATTCAAGTGGAGGGTGTATTTGAGCCTAAAAGAAATGATGTTGTTCATGAAGCTAAGCTGATCAGGAAAGACATGATTGTCGACTCTATTCGTgtgttttctttttcttggttTAGTAGTCGCCA...

CDS

Download CDS FASTA

2487 bp · LXL04_009665|LXL04_009665|OH1004|CDS

ATGGTGGTGTCAATGATGACCAGTACCGTACCTTTTTGTCCTATTTGTGGTTTGGAAGATGAGCAATTGGGGCACTTGTTCGGCCAATGTGAAGTTGCAGCTAGGACGTGGAGTGTGATTTTTAGGTGGCTTGGTATTCAAGTGGAGGGTGTATTTGAGCCTAAAAGAAATGATGTTGTTCATGAAGCTAAGCTGATCAGGAAAGACATGATTGTCGACTCTATTCGTGTGTTTTCTTTTTCTTGGTTTAGTAGTCGCCA...

Protein

Download Protein FASTA

828 aa · LXL04_009665|LXL04_009665|OH1004|PROTEIN

MVVSMMTSTVPFCPICGLEDEQLGHLFGQCEVAARTWSVIFRWLGIQVEGVFEPKRNDVVHEAKLIRKDMIVDSIRVFSFSWFSSRQNKPVIRPLHLLRRDSGHFIFSGEIPASSPVESAQSGLATATCCTCRVSSSTSDIVIDVNETRKIDNSIGYDLSPEIEHKLPPIITKSAIARPSSRNTQTSHSGKKVKEANKIPARKSLSGVKIRPSSPKLAVSKMIGQKSAQRKKETKAKFEQFWIEKKRQKLQQPDKILLFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009665`
TK1151 ID	TkA03G461180
OH-1004 ID	LXL04_009665
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	74.800
Protein coverage (%)	TK1151 91.844 / OH-1004 31.522 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_009665`
Location	Chr02:130905293-130911959 (-)
Description	Similar to Mettl6: tRNA N(3)-methylcytidine methyltransferase METTL6
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_009665` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006400 tRNA modification Biological Process GO:0030488 tRNA methylation Biological Process GO:0106217 tRNA C3-cytosine methylation Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0043527 tRNA methyltransferase complex Cellular Component GO:0019899 enzyme binding Molecular Function GO:0052735 tRNA (cytidine-3-)-methyltransferase activity Molecular Function
KEGG gene cross-reference	hsa:131965 mmu:67011 pon:100171853 rno:290564 spo:2541032 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.490

Rank 1 · LXL04_009665 · OH-1004

Nucleus0.489

Rank 2 · LXL04_009665 · OH-1004

Mitochondrion0.074

Rank 3 · LXL04_009665 · OH-1004

Cell membrane0.056

Rank 4 · LXL04_009665 · OH-1004

Endoplasmic reticulum0.046

Rank 5 · LXL04_009665 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13489.13Methyltransf_23368-535 aa

PF05175.21MTS374-453 aa

PF13847.13Methyltransf_31378-507 aa

PF00891.25Methyltransf_2380-491 aa

PF13649.13Methyltransf_25381-481 aa

PF08242.19Methyltransf_12382-482 aa

PF08241.19Methyltransf_11382-485 aa

PF10294.16Methyltransf_16621-773 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009665	`PF13489.13`	Methyltransf_23	368	535	2.3e-18	67.2
LXL04_009665	`PF05175.21`	MTS	374	453	2.4e-10	41.0
LXL04_009665	`PF13847.13`	Methyltransf_31	378	507	5.9e-17	62.5
LXL04_009665	`PF00891.25`	Methyltransf_2	380	491	7.2e-06	26.2
LXL04_009665	`PF13649.13`	Methyltransf_25	381	481	6e-18	66.1
LXL04_009665	`PF08242.19`	Methyltransf_12	382	482	4.3e-21	76.2
LXL04_009665	`PF08241.19`	Methyltransf_11	382	485	7.8e-15	56.0
LXL04_009665	`PF10294.16`	Methyltransf_16	621	773	3.6e-21	76.4
LXL04_009665	`PF06325.20`	PrmA	643	772	1.2e-07	32.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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