LXL04_009632 | RubberDandelionOmics

基因概览

LXL04_009632

当前版本: OH-1004 染色体: Chr02 坐标: 130007491-130008252 链方向: - 类型: protein_coding

cDNA / CDS / 蛋白序列

可用序列下载 CDS FASTA 蛋白 FASTA cDNA FASTA

cDNA

726 bp · LXL04_009632|LXL04_009632|OH1004|cDNA

ATGGGTGGCGTAAGGAGCACAATCTTCCTGTTCATATTCCTGAAACTTTCAATCACAATCGCTTCAAATGATTCATTCTGGCTACTCAAAATCCAATCGGAATTCGTCGATTCAACGGGAGTTTTCAAAAACTCGTCGCCGGGATCAAATATATGCACATGGAACGGCGTACAATGTTCAGAAGATGATCAAACACGTGTCGTGggtataaacctttcaaatTCGGGACTCTCGGGAACGATTTCTCCCGATTTTTCAAA...

CDS

下载 CDS FASTA

726 bp · LXL04_009632|LXL04_009632|OH1004|CDS

ATGGGTGGCGTAAGGAGCACAATCTTCCTGTTCATATTCCTGAAACTTTCAATCACAATCGCTTCAAATGATTCATTCTGGCTACTCAAAATCCAATCGGAATTCGTCGATTCAACGGGAGTTTTCAAAAACTCGTCGCCGGGATCAAATATATGCACATGGAACGGCGTACAATGTTCAGAAGATGATCAAACACGTGTCGTGGGTATAAACCTTTCAAATTCGGGACTCTCGGGAACGATTTCTCCCGATTTTTCAAA...

蛋白

下载蛋白 FASTA

241 aa · LXL04_009632|LXL04_009632|OH1004|PROTEIN

MGGVRSTIFLFIFLKLSITIASNDSFWLLKIQSEFVDSTGVFKNSSPGSNICTWNGVQCSEDDQTRVVGINLSNSGLSGTISPDFSKLVSLQKLDLSVNSLTGEIPKKLGELQELQELYLFSNYLTGSMPVEFRLLKKLRVLRIGDNLLTGEIIESIGELSELRYSFKNWEIEVVEVTSVTDDLGVENEINLGGCCELDFKQDPETVAIEDAVKVLLEGLGEDINREGMQIHMLCMRSTCD

上下游序列下载

序列方向与下载说明

上游/下游最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

多版本 ID 对照

输入 ID	`LXL04_009632`
版本	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

查看完整 ID 对照表

SNP / Indel 变异与样本携带情况CRA009020 · OH-1004

展开后加载该基因的变异记录。

基因基本信息与功能注释

基因 ID LXL04_009632

位置 Chr02:130007491-130008252 (-)

描述 Similar to GSO1: LRR receptor-like serine/threonine-protein kinase GSO1

拟南芥 / 水稻参考基因与文献

下载当前基因文献

拟南芥

参考基因 ID	可能功能	对应论文 / DOI
`At4g20140`	与GSO2共同参与胚胎和子叶表皮表面发育所需的受体样丝氨酸／苏氨酸激酶。	GASSHO1 and GASSHO2 encoding a putative leucine-rich repeat transmembrane-type receptor kinase are essential for the normal development of the epidermal surface in Arabidopsis embryos.2008 · DOI: 10.1111/j.1365-313x.2007.03395.x The receptor-like kinases GSO1 and GSO2 together regulate root growth in Arabidopsis through control of cell division and cell fate specification.2014 · DOI: 10.1002/dvdy.24066 A peptide hormone required for Casparian strip diffusion barrier formation in Arabidopsis roots.2017 · DOI: 10.1126/science.aai9057
`At3g51740`	可能不活跃的富含亮氨酸重复的受体样蛋白激酶 IMK2。	暂无已核实直接文献
`At5g21090`	参与植物防御反应。	A novel simple extracellular leucine-rich repeat (eLRR) domain protein from rice (OsLRR1) enters the endosomal pathway and interacts with the hypersensitive-induced reaction protein 1 (OsHIR1).2009 · DOI: 10.1111/j.1365-3040.2009.02039.x
`At2g26330`	可能作为受体激酶，与 ERL1 和 ERL2 共同调节地上部株型及气孔分布。	KNAT1 and ERECTA regulate inflorescence architecture in Arabidopsis.2002 · DOI: 10.1105/tpc.010391 Novel as1 and as2 defects in leaf adaxial-abaxial polarity reveal the requirement for ASYMMETRIC LEAVES1 and 2 and ERECTA functions in specifying leaf adaxial identity.2003 · DOI: 10.1242/dev.00622 ERECTA, an LRR receptor-like kinase protein controlling development pleiotropically affects resistance to bacterial wilt.2003 · DOI: 10.1046/j.1365-313x.2003.01877.x Synergistic interaction of three ERECTA-family receptor-like kinases controls Arabidopsis organ growth and flower development by promoting cell proliferation.2004 · DOI: 10.1242/dev.01028 ERECTA is required for protection against heat-stress in the AS1/ AS2 pathway to regulate adaxial-abaxial leaf polarity in Arabidopsis.2004 · DOI: 10.1007/s00425-004-1248-z ERECTA receptor-like kinase and heterotrimeric G protein from Arabidopsis are required for resistance to the necrotrophic fungus Plectosphaerella cucumerina.2005 · DOI: 10.1111/j.1365-313x.2005.02440.x The ERECTA gene regulates plant transpiration efficiency in Arabidopsis.2005 · DOI: 10.1038/nature03835 Pedicel development in Arabidopsis thaliana: contribution of vascular positioning and the role of the BREVIPEDICELLUS and ERECTA genes.2005 · DOI: 10.1016/j.ydbio.2005.06.011 Interaction of auxin and ERECTA in elaborating Arabidopsis inflorescence architecture revealed by the activation tagging of a new member of the YUCCA family putative flavin monooxygenases.2005 · DOI: 10.1104/pp.105.063495 ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048041 Haploinsufficiency after successive loss of signaling reveals a role for ERECTA-family genes in Arabidopsis ovule development.2007 · DOI: 10.1242/dev.004788 Genetics of microenvironmental canalization in Arabidopsis thaliana.2007 · DOI: 10.1073/pnas.0701936104 A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations.2009 · DOI: 10.1093/jxb/erp084 Polymorphic genes of major effect: consequences for variation, selection and evolution in Arabidopsis thaliana.2009 · DOI: 10.1534/genetics.108.097030 The ERECTA Receptor-Like Kinase Regulates Cell Wall-Mediated Resistance to Pathogens in Arabidopsis thaliana.2009 · DOI: 10.1094/mpmi-22-8-0953 Direct interaction of ligand-receptor pairs specifying stomatal patterning.2012 · DOI: 10.1101/gad.179895.111 Regulation of inflorescence architecture by intertissue layer ligand-receptor communication between endodermis and phloem.2012 · DOI: 10.1073/pnas.1117537109 Regulation of plant vascular stem cells by endodermis-derived EPFL-family peptide hormones and phloem-expressed ERECTA-family receptor kinases.2013 · DOI: 10.1093/jxb/ert196 A receptor-like protein acts as a specificity switch for the regulation of stomatal development.2017 · DOI: 10.1101/gad.297580.117 The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats.1996 · DOI: 10.1105/tpc.8.4.735

水稻

参考基因 ID	可能功能	对应论文 / DOI
`UniProt: B8BB68`	参与防御反应的 LRR 受体激酶。	暂无已核实直接文献

功能注释来源

查看注释来源

功能注释来源：OH1004 · LXL04_009632 · GCA_047496595.1_OSU_TarKok_2.0。

GO 注释（OH1004 来源）

GO:0009611 response to wounding 生物过程

GO:0042659 regulation of cell fate specification 生物过程

GO:0045184 establishment of protein localization 生物过程

GO:0051302 regulation of cell division 生物过程

GO:0055075 potassium ion homeostasis 生物过程

GO:0090708 specification of plant organ axis polarity 生物过程

GO:0160073 Casparian strip assembly 生物过程

GO:2000067 regulation of root morphogenesis 生物过程

GO:2000280 regulation of root development 生物过程

GO:0005886 plasma membrane 细胞组分

GO:0048226 Casparian strip 细胞组分

GO:0004674 protein serine/threonine kinase activity 分子功能

KEGG 基因交叉引用

ath:AT4G20140

以下为同源蛋白关联的 KEGG 基因编号，不代表本基因已获得通路功能验证。

打开注释模块

基因表达

查看该基因在不同研究、组织与处理条件下的表达量。表达结果按研究与计量单位分别展示。

查看该基因的表达量

数据来源与对应关系说明

表达数据来自公开转录组研究；参考版本、样本信息和表达单位见查询结果。跨参考版本的对应关系不唯一时，不自动选择表达记录；缺失值不视为表达量为零。

亚细胞定位 Top 5

以下为计算预测或同源注释，不能替代定位实验。

细胞膜0.269

排名 1 · LXL04_009632 · OH-1004

内质网0.198

排名 2 · LXL04_009632 · OH-1004

质体0.144

排名 3 · LXL04_009632 · OH-1004

细胞质0.139

排名 4 · LXL04_009632 · OH-1004

细胞核0.136

排名 5 · LXL04_009632 · OH-1004

LocPro · 直接预测 · 计算预测，非定位实验结果

进入亚细胞定位查询

预测功能结构域

结构域结果来自 Pfam-A/HMMER；位置为对应蛋白序列上的氨基酸坐标。

PF13855.13LRR_870-125 aa

PF23598.2LRR_1484-165 aa

基因 ID	结构域编号	结构域名称	起始 aa	终止 aa	E 值	评分
LXL04_009632	`PF13855.13`	LRR_8	70	125	2e-09	37.8
LXL04_009632	`PF23598.2`	LRR_14	84	165	1.1e-06	28.4

拟南芥 / 水稻蛋白同源

仅展示拟南芥和水稻；Swiss-Prot 为人工审校条目，TrEMBL 为补充序列候选。同源相似性不等同于实验验证。

下载当前结果

蛋白	物种	描述	一致性	数据库	置信等级
`C0LGQ5`	拟南芥	LRR receptor-like serine/threonine-protein kinase GSO1	46.957%	Swiss-Prot	低置信数据库同源证据
`Q9SCT4`	拟南芥	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2	41.007%	Swiss-Prot	中等数据库同源证据
`Q9FPJ5`	拟南芥	Leucine-rich repeat protein 1	38.406%	Swiss-Prot	中等数据库同源证据
`Q42371`	拟南芥	LRR receptor-like serine/threonine-protein kinase ERECTA	36.905%	Swiss-Prot	中等数据库同源证据
`B8BB68`	水稻	LRR receptor kinase BAK1	33.136%	Swiss-Prot	中等数据库同源证据

JBrowse

在基因组浏览器中查看

基因详情