Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1173 bp · LXL04_009592|LXL04_009592|OH1004|cDNA
ATGTCATATCTTCAAGCTTCTAACTCACAAGATGAATCAATGTTTCAATATCCTTACTATCTTCACCAAGACTCAAACTTCAACCTTCCATCAATTCCAATCATCACATCACAACCCCATCTCCCATATTACCACTGCATCGCCACCATCAAATGCAACAACTCCTATATCTCCTCACTTGCCATTTATGGAAACTCACTATATACCGGATCTTCCAACAAAGAAATCCGTATATGGAAACTAGACACCATAAAATCACA...
1173 bp · LXL04_009592|LXL04_009592|OH1004|CDS
ATGTCATATCTTCAAGCTTCTAACTCACAAGATGAATCAATGTTTCAATATCCTTACTATCTTCACCAAGACTCAAACTTCAACCTTCCATCAATTCCAATCATCACATCACAACCCCATCTCCCATATTACCACTGCATCGCCACCATCAAATGCAACAACTCCTATATCTCCTCACTTGCCATTTATGGAAACTCACTATATACCGGATCTTCCAACAAAGAAATCCGTATATGGAAACTAGACACCATAAAATCACA...
Protein
Download Protein FASTA390 aa · LXL04_009592|LXL04_009592|OH1004|PROTEIN
MSYLQASNSQDESMFQYPYYLHQDSNFNLPSIPIITSQPHLPYYHCIATIKCNNSYISSLAIYGNSLYTGSSNKEIRIWKLDTIKSQFNQEHQSESIVVVTGEGAIKSLVISSDKIFSAHQDHKIRVWKLEGQDRKFTHVATLPTFGDRALKILTPRNHVQVRRNKTSTWVHHVDTVSGLALSRDGLVIYSVSWDRTLKIWRTSDFKCVESVANAHDDAINTVVVSSNGDVYTGSSDKKIKIWRKSEEKHNHILIATLKK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009592 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009592 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:129356032-129357204 (-) | |||||||||
| Description | Similar to JGB: Protein JINGUBANG | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0009846 pollen germination Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0035097 histone methyltransferase complex Cellular Component GO:0004197 cysteine-type endopeptidase activity Molecular Function GO:0005525 GTP binding Molecular Function | |||||||||
| KEGG gene cross-reference | ana:all2124 ath:AT2G26490 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF25171.2Beta-prop_WDR36-Utp21_1st49-289 aaPF25175.2Beta-prop_WDR563-230 aaPF25174.2Beta-prop_THOC363-133 aaPF24817.2WD40_WDHD1_1st64-212 aaPF24807.2WD40_CDC20-Fz93-332 aaPF24782.3WD40_MABP1-WDR62_2nd110-291 aaPF23409.2Beta-prop_EML143-276 aaPF24796.2WDR55164-290 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_009592 | PF25171.2 | Beta-prop_WDR36-Utp21_1st | 49 | 289 | 1.1e-08 | 35.5 |
| LXL04_009592 | PF25175.2 | Beta-prop_WDR5 | 63 | 230 | 2.3e-32 | 113.1 |
| LXL04_009592 | PF25174.2 | Beta-prop_THOC3 | 63 | 133 | 1.5e-25 | 90.5 |
| LXL04_009592 | PF24817.2 | WD40_WDHD1_1st | 64 | 212 | 2.4e-20 | 73.7 |
| LXL04_009592 | PF24807.2 | WD40_CDC20-Fz | 93 | 332 | 5.3e-23 | 82.5 |
| LXL04_009592 | PF24782.3 | WD40_MABP1-WDR62_2nd | 110 | 291 | 1.4e-07 | 31.5 |
| LXL04_009592 | PF23409.2 | Beta-prop_EML | 143 | 276 | 1.5e-16 | 61.4 |
| LXL04_009592 | PF24796.2 | WDR55 | 164 | 290 | 5.3e-17 | 62.5 |
| LXL04_009592 | PF25391.2 | WD40_Gbeta | 166 | 332 | 6.4e-13 | 49.1 |
| LXL04_009592 | PF00400.39 | WD40 | 167 | 201 | 4e-37 | 125.8 |
| LXL04_009592 | PF25173.2 | Beta-prop_WDR3_1st | 172 | 244 | 1.4e-28 | 100.5 |
| LXL04_009592 | PF24817.2 | WD40_WDHD1_1st | 173 | 333 | 2.4e-20 | 73.7 |
| LXL04_009592 | PF23381.2 | Beta-prop_IFT122_1st | 177 | 246 | 8.9e-24 | 85.0 |
| LXL04_009592 | PF25172.2 | Beta-prop_WDR3_2nd | 177 | 293 | 3.3e-23 | 83.1 |
| LXL04_009592 | PF23414.2 | Beta-prop_EML_2 | 178 | 332 | 1.4e-12 | 48.3 |
| LXL04_009592 | PF25171.2 | Beta-prop_WDR36-Utp21_1st | 192 | 332 | 1.1e-08 | 35.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.