LXL04_006186 | RubberDandelionOmics

Gene overview

LXL04_006186

Reference: OH-1004 Chr: Chr02 Coordinates: 3409166-3409802 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

537 bp · LXL04_006186|LXL04_006186|OH1004|cDNA

ATGGCAGGAACAGAAGCTTTTCCAGATTTAGGCAGACACTGTCAGCTCCCCGATTGCAACCAGCTCGATTTTCTCCCTTTCAAATGCGCCGGTTGCGAAAAGGTTTTTTGCGTTGAACATCGATCGTACAAGTCTCACGAATGTTCAAACTCCGATCACAACAGTAGAAAAGTTGTGGTCTGTGACACATGCTCCATGTCGATCGAGATTCCACGAAACAGAAAAGGAGTGGTAGAAGAAGAAGATGTTCAGAACAAATT...

CDS

Download CDS FASTA

537 bp · LXL04_006186|LXL04_006186|OH1004|CDS

ATGGCAGGAACAGAAGCTTTTCCAGATTTAGGCAGACACTGTCAGCTCCCCGATTGCAACCAGCTCGATTTTCTCCCTTTCAAATGCGCCGGTTGCGAAAAGGTTTTTTGCGTTGAACATCGATCGTACAAGTCTCACGAATGTTCAAACTCCGATCACAACAGTAGAAAAGTTGTGGTCTGTGACACATGCTCCATGTCGATCGAGATTCCACGAAACAGAAAAGGAGTGGTAGAAGAAGAAGATGTTCAGAACAAATT...

Protein

Download Protein FASTA

178 aa · LXL04_006186|LXL04_006186|OH1004|PROTEIN

MAGTEAFPDLGRHCQLPDCNQLDFLPFKCAGCEKVFCVEHRSYKSHECSNSDHNSRKVVVCDTCSMSIEIPRNRKGVVEEEDVQNKLILEKHRRSGDCDPKKKKKPTCGVRRCKEILTFSNTSTCKSCEVISAKAKTSRRWLLVAVHGPSRMGEACTKKTSGSGSSTASTPSTSVKAY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006186`
TK1151 ID	TkA03G016220
OH-1004 ID	LXL04_006186
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	82.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006186

Location Chr02:3409166-3409802 (+)

Description Similar to SAP12: Zinc finger AN1 domain-containing stress-associated protein 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g28210`	May be involved in environmental stress response.	No verified direct reference in this release
`At2g41835`	May be involved in environmental stress response.	No verified direct reference in this release
`At3g57480`	May be involved in environmental stress response.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0385700`	May be involved in environmental stress response.	No verified direct reference in this release
`Os07g0569700`	May be involved in environmental stress response.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006186 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0097501 stress response to metal ion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G41835

ath:AT3G28210

ath:AT3G57480

dosa:Os07g0569700

dosa:Os09g0385700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.582

Rank 1 · LXL04_006186 · OH-1004

Cytoplasm0.383

Rank 2 · LXL04_006186 · OH-1004

Mitochondrion0.078

Rank 3 · LXL04_006186 · OH-1004

Cell membrane0.047

Rank 4 · LXL04_006186 · OH-1004

Endoplasmic reticulum0.033

Rank 5 · LXL04_006186 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01428.24zf-AN114-51 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006186	`PF01428.24`	zf-AN1	14	51	7.1e-14	52.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q67YE6`	Arabidopsis thaliana	Zinc finger AN1 domain-containing stress-associated protein 12	56.962%	Swiss-Prot	strong database homology
`Q8VZ42`	Arabidopsis thaliana	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11	45.455%	Swiss-Prot	moderate database homology
`Q9SCM4`	Arabidopsis thaliana	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13	43.182%	Swiss-Prot	moderate database homology
`Q6H595`	Oryza sativa subsp. japonica	Zinc finger AN1 domain-containing stress-associated protein 17	53.175%	Swiss-Prot	strong database homology
`Q0D5B9`	Oryza sativa subsp. japonica	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16	44.615%	Swiss-Prot	moderate database homology

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