LXL04_004027 | RubberDandelionOmics

Gene overview

LXL04_004027

Reference: OH-1004 Chr: Chr01 Coordinates: 122561001-122562706 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1077 bp · LXL04_004027|LXL04_004027|OH1004|cDNA

ATGGATCCGAAGAAGAAATCCGTCAAAGAAAAGAACACCAATCGCGAGGAGATAGTGAAGATCATTCACTGGGAAGATTTTCAACAGGAGCTTGCTCGTCTTTCGAGTCTGTCGTCCGCCCTTAACGAAGCTAAGGAGAAGAAGTCTGTTATTCAAGAGAAACTCAACTCTCATTTACAGTTAGAAGCAGAGTCATTAAGTCGATCAAATAAGCTAGACCAAATGCGGGAAAATTTAGAAGCTCGAAAGTTGGTTATGGG...

CDS

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1077 bp · LXL04_004027|LXL04_004027|OH1004|CDS

ATGGATCCGAAGAAGAAATCCGTCAAAGAAAAGAACACCAATCGCGAGGAGATAGTGAAGATCATTCACTGGGAAGATTTTCAACAGGAGCTTGCTCGTCTTTCGAGTCTGTCGTCCGCCCTTAACGAAGCTAAGGAGAAGAAGTCTGTTATTCAAGAGAAACTCAACTCTCATTTACAGTTAGAAGCAGAGTCATTAAGTCGATCAAATAAGCTAGACCAAATGCGGGAAAATTTAGAAGCTCGAAAGTTGGTTATGGG...

Protein

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358 aa · LXL04_004027|LXL04_004027|OH1004|PROTEIN

MDPKKKSVKEKNTNREEIVKIIHWEDFQQELARLSSLSSALNEAKEKKSVIQEKLNSHLQLEAESLSRSNKLDQMRENLEARKLVMGNMSMRSKVVQEKSKKQEEQLNSQIRSLLMAGTSLSAASKSLQEANNSLNGERGYVHLRNLQKLLRGRQQFMVSQIALLYPVKVVTGHTSDQELESFSSTSNKPTGNPSGSKPMDNAAGSLTISGLHLTVLPFKKMSFFTDKKEVQRSATALGYVAHAISLIAFYLEIPLRYPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004027`
TK1151 ID	TkA01G210830
OH-1004 ID	LXL04_004027
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004027

Location Chr01:122561001-122562706 (+)

Description Similar to UVRAG: UV radiation resistance-associated gene protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g32760`	Dispensable for autophagy but essential for efficient targeting and degradation of biosynthetic and endocytic cargo to the vacuole.	Vacuolar Trafficking Protein VPS38 Is Dispensable for Autophagy.2018 · DOI: 10.1104/pp.17.01297 The Arabidopsis USL1 controls multiple aspects of development by affecting late endosome morphology.2018 · DOI: 10.1111/nph.15249

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004027 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006623 protein targeting to vacuole Biological Process

GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Biological Process

GO:0006914 autophagy Biological Process

GO:0007051 spindle organization Biological Process

GO:0007059 chromosome segregation Biological Process

GO:0007098 centrosome cycle Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010506 regulation of autophagy Biological Process

GO:0015031 protein transport Biological Process

GO:0032465 regulation of cytokinesis Biological Process

GO:0032801 receptor catabolic process Biological Process

KEGG gene cross-reference

ath:AT2G32760

hsa:7405

mmu:78610

spo:2540836

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.557

Rank 1 · LXL04_004027 · OH-1004

Nucleus0.298

Rank 2 · LXL04_004027 · OH-1004

Golgi apparatus0.126

Rank 3 · LXL04_004027 · OH-1004

Cell membrane0.115

Rank 4 · LXL04_004027 · OH-1004

Lysosome / Vacuole0.105

Rank 5 · LXL04_004027 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8S9J3`	Arabidopsis thaliana	Vacuolar protein sorting 38	56.484%	Swiss-Prot	strong database homology

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