LXL04_002536 | RubberDandelionOmics

Gene overview

LXL04_002536

Reference: OH-1004 Chr: Chr01 Coordinates: 51002997-51004031 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

930 bp · LXL04_002536|LXL04_002536|OH1004|cDNA

ATGGAATCTAACGACATCATAGCACCTTTCGTCCTCAAAACCTATCAGATGGTCAACGACCCTTCGCTCGATGGCTTCATACGGTGGGGAATCGCCAGTAACAGCTTCATCGTCGTCGAACCCCTCGAATTCTCCCAACGTCTTTTGCCAGCTTACTTCAAACACAATAACTTCTCCAGCTTTGTTCGTCAACTGAACACTTATGGTTTCAGAAAAGTGGATCCTGATAGATGGGAGTTTGCGAACGAGTGGTTTTTGAG...

CDS

Download CDS FASTA

930 bp · LXL04_002536|LXL04_002536|OH1004|CDS

ATGGAATCTAACGACATCATAGCACCTTTCGTCCTCAAAACCTATCAGATGGTCAACGACCCTTCGCTCGATGGCTTCATACGGTGGGGAATCGCCAGTAACAGCTTCATCGTCGTCGAACCCCTCGAATTCTCCCAACGTCTTTTGCCAGCTTACTTCAAACACAATAACTTCTCCAGCTTTGTTCGTCAACTGAACACTTATGGTTTCAGAAAAGTGGATCCTGATAGATGGGAGTTTGCGAACGAGTGGTTTTTGAG...

Protein

Download Protein FASTA

309 aa · LXL04_002536|LXL04_002536|OH1004|PROTEIN

MESNDIIAPFVLKTYQMVNDPSLDGFIRWGIASNSFIVVEPLEFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQTHLLKNIERKRQINNRNFMRGEDDEEDEMAMEIARLKQEQKSLEQELVGMNKRLEATERRPDQMMALLHKVAEDPEILPRMMLEKDQRSKRLVKKKRQRILIPPSPPPSSSSRVKFKEEECQIMEGWAASSPEAYYGNEPFWQSPSTPSSDTPSMAWPKSKAGGGAVNMES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002536`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002536

Location Chr01:51002997-51004031 (+)

Description Similar to HSFC1: Heat stress transcription factor C-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g24520`	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0232000`	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).	No verified direct reference in this release
`Os01g0733200`	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).	No verified direct reference in this release
`Os01g0625300`	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).	No verified direct reference in this release
`Os06g0553100`	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002536 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0034605 cellular response to heat Biological Process

GO:0005634 nucleus Cellular Component

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT3G24520

dosa:Os01g0625300

dosa:Os01g0733200

dosa:Os02g0232000

dosa:Os06g0553100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.963

Rank 1 · LXL04_002536 · OH-1004

Cytoplasm0.123

Rank 2 · LXL04_002536 · OH-1004

Cell membrane0.020

Rank 3 · LXL04_002536 · OH-1004

Endoplasmic reticulum0.011

Rank 4 · LXL04_002536 · OH-1004

Mitochondrion0.011

Rank 5 · LXL04_002536 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00447.24HSF_DNA-bind10-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002536	`PF00447.24`	HSF_DNA-bind	10	99	9.2e-29	100.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LV52`	Arabidopsis thaliana	Heat stress transcription factor C-1	64.894%	Swiss-Prot	moderate database homology
`Q6EUG4`	Oryza sativa subsp. japonica	Heat stress transcription factor C-2a	54.444%	Swiss-Prot	moderate database homology
`Q942D6`	Oryza sativa subsp. japonica	Heat stress transcription factor C-1b	53.409%	Swiss-Prot	moderate database homology
`Q6VBA4`	Oryza sativa subsp. japonica	Heat stress transcription factor C-1a	47.534%	Swiss-Prot	moderate database homology
`Q0DBL6`	Oryza sativa subsp. japonica	Heat stress transcription factor C-2b	54.749%	Swiss-Prot	moderate database homology

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