LXL04_002480 | RubberDandelionOmics

Gene overview

LXL04_002480

Reference: OH-1004 Chr: Chr01 Coordinates: 49603283-49608925 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1590 bp · LXL04_002480|LXL04_002480|OH1004|cDNA

TATAATTACGTCATCGTCATATTTCCGTTTTTTCTACGCTATATTTACCTCCTTCCCCTCCCCCACGATTCTCGAACTCCAACAGCTTCTCTCTACACAAATCACCCGAATCGGAGCAAATCCAGCGATAAGCGTAGCAAAATGTCGTGGCAAGCGTACGTCGATGACCACTTGATGTGCGAAATCGAAGGAAATCACCTCTCCTCCGCCGCAATCATCGGTCTCGATGGGAGCATCTGGGCCCAGTCAACAAACTTCCC...

CDS

Download CDS FASTA

1449 bp · LXL04_002480|LXL04_002480|OH1004|CDS

ATGTCGTGGCAAGCGTACGTCGATGACCACTTGATGTGCGAAATCGAAGGAAATCACCTCTCCTCCGCCGCAATCATCGGTCTCGATGGGAGCATCTGGGCCCAGTCAACAAACTTCCCTGCGGTTAAGCCAGAGGAAATAACTGCTATCATAAATGACCTTAACGAGCCTGGCTCACTTGCCCCAACTGGCTTATACCTTGGTGGGACCAAATACATGGTTATTCAAGGTGAAGCTGGAGCTGTGATTCGAGGGAAAAA...

Protein

Download Protein FASTA

482 aa · LXL04_002480|LXL04_002480|OH1004|PROTEIN

MSWQAYVDDHLMCEIEGNHLSSAAIIGLDGSIWAQSTNFPAVKPEEITAIINDLNEPGSLAPTGLYLGGTKYMVIQGEAGAVIRGKKGPGGVTVKKTTMSLIIGVYDEPMTPGQCNMIVIDKLTGPKKIKMGMKSLKQLKLSVPTQDAPITSFLTTSGTFHDGDLLLNLKGLRLASEDKENRPSDAKEIDLQFSLEDLETIKVIGKGSGGIVQLVRHKWIGRLFALKVIQMNIQEDIRKQIVQELKINQASQCPNIVVCY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002480`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002480

Location Chr01:49603283-49608925 (+)

Description Similar to MKK6: Mitogen-activated protein kinase kinase 6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g56580`	The ANPs-MKK6-MPK4 module is involved in the regulation of plant cytokinesis during meiosis and mitosis.	NQK1/NtMEK1 is a MAPKK that acts in the NPK1 MAPKKK-mediated MAPK cascade and is required for plant cytokinesis.2003 · DOI: 10.1101/gad.1071103 The Arabidopsis thaliana MEK AtMKK6 activates the MAP kinase AtMPK13.2004 · DOI: 10.1016/j.febslet.2004.08.051 HINKEL kinesin, ANP MAPKKKs and MKK6/ANQ MAPKK, which phosphorylates and activates MPK4 MAPK, constitute a pathway that is required for cytokinesis in Arabidopsis thaliana.2010 · DOI: 10.1093/pcp/pcq135 The MAP kinase MPK4 is required for cytokinesis in Arabidopsis thaliana.2010 · DOI: 10.1105/tpc.110.077164 AtMPK4 is required for male-specific meiotic cytokinesis in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2011.04642.x AtMKK6 and AtMPK13 are required for lateral root formation in Arabidopsis.2011 · DOI: 10.4161/psb.6.10.17089

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0510100`	Mitogen-activated protein kinase kinase 1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002480 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0006952 defense response Biological Process

GO:0007112 male meiosis cytokinesis Biological Process

GO:0007165 signal transduction Biological Process

GO:0010200 response to chitin Biological Process

GO:0010311 lateral root formation Biological Process

GO:0051707 response to other organism Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004708 MAP kinase kinase activity Molecular Function

GO:0004713 protein tyrosine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G56580

dosa:Os01g0510100

nta:107818847

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.691

Rank 1 · LXL04_002480 · OH-1004

Nucleus0.416

Rank 2 · LXL04_002480 · OH-1004

Cell membrane0.094

Rank 3 · LXL04_002480 · OH-1004

Mitochondrion0.058

Rank 4 · LXL04_002480 · OH-1004

Endoplasmic reticulum0.055

Rank 5 · LXL04_002480 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00235.26Profilin1-119 aa

PF00069.32Pkinase199-452 aa

PF07714.24PK_Tyr_Ser-Thr199-402 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002480	`PF00235.26`	Profilin	1	119	5.3e-37	127.5
LXL04_002480	`PF00069.32`	Pkinase	199	452	1.3e-62	212.4
LXL04_002480	`PF07714.24`	PK_Tyr_Ser-Thr	199	402	3.2e-34	119.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJV0`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase 6	79.885%	Swiss-Prot	strong database homology
`Q5QN75`	Oryza sativa subsp. japonica	Mitogen-activated protein kinase kinase 1	72.881%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card