Gene Card
Gene overview
cDNA / CDS / Protein Sequences
676 bp · LXL04_002327|LXL04_002327|OH1004|cDNA
AGATGCCGAACCATTTATATCATGGAAAAATCCAAACTTGGAAATGCTAATCGATTACATAGCTTATAAGCTAAATTGGGAACCCTCTTTTATACGACAAAAGGTCTTTCCACTTGTGTCCACCATTTTCTTGAGAAACATAGCCAAAAATCAAGAAACCGGATTATTATACGGACAATATGAGTTTGACTTCATTCAAAGAACAAAGATAAGATTTGGGCATATGTTGTATGTGGTTACTTGGACAAAACACGGTCAAA...
513 bp · LXL04_002327|LXL04_002327|OH1004|CDS
TTGGAAATGCTAATCGATTACATAGCTTATAAGCTAAATTGGGAACCCTCTTTTATACGACAAAAGGTCTTTCCACTTGTGTCCACCATTTTCTTGAGAAACATAGCCAAAAATCAAGAAACCGGATTATTATACGGACAATATGAGTTTGACTTCATTCAAAGAACAAAGATAAGATTTGGGCATATGTTGTATGTGGTTACTTGGACAAAACACGGTCAAATAGTCAACAAGAACAATGTCCATACAACTACAACACA...
Protein
Download Protein FASTA170 aa · LXL04_002327|LXL04_002327|OH1004|PROTEIN
MEMLIDYIAYKLNWEPSFIRQKVFPLVSTIFLRNIAKNQETGLLYGQYEFDFIQRTKIRFGHMLYVVTWTKHGQIVNKNNVHTTTTHLEDSQVQEWVMTDESVNNVHVDNGCLMTDENMDLVMAAYPEKVHQFMQQKESKESKSKKRGRAKSTSTPEGSRSVQLNITEFY
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_002327 |
|---|---|
| TK1151 ID | TkAUNG014080 |
| OH-1004 ID | LXL04_002327 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 98.824Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_002327 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:46299894-46300646 (+) | ||||||||||||
| Description | Similar to RAD: Flap endonuclease GEN-like 1 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006281 DNA repair Biological Process GO:0009555 pollen development Biological Process GO:0009650 UV protection Biological Process GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0003690 double-stranded DNA binding Molecular Function GO:0003697 single-stranded DNA binding Molecular Function GO:0008821 crossover junction DNA endonuclease activity Molecular Function GO:0017108 5'-flap endonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function GO:0048256 flap endonuclease activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G01880 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.