LXL04_001766 | RubberDandelionOmics

Gene overview

LXL04_001766

Reference: OH-1004 Chr: Chr01 Coordinates: 32993251-32996600 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1470 bp · LXL04_001766|LXL04_001766|OH1004|cDNA

ATGGGTTTTTTTTTTATGGTAATCTTGGTGGGGTTCGTGTTTGGTTTGATCCTAAACCATTACTTGCCATTGCTGTTCTTAAAAAACAAGAAACTTGGTGCTCTTCCTCGAGGCTCATTTGGATACTTACCTCTTCTTGGTGAAACCCTAGCATTTCTTAAACCCCATCCTTCCACCACCATTGGCTCTTTTCTTCAAGATCATTGTTCTAGGTATGGAAAAGTGTTCAAATCACATTTATTCTTCTCACCTACCATTGT...

CDS

Download CDS FASTA

1470 bp · LXL04_001766|LXL04_001766|OH1004|CDS

ATGGGTTTTTTTTTTATGGTAATCTTGGTGGGGTTCGTGTTTGGTTTGATCCTAAACCATTACTTGCCATTGCTGTTCTTAAAAAACAAGAAACTTGGTGCTCTTCCTCGAGGCTCATTTGGATACTTACCTCTTCTTGGTGAAACCCTAGCATTTCTTAAACCCCATCCTTCCACCACCATTGGCTCTTTTCTTCAAGATCATTGTTCTAGGTATGGAAAAGTGTTCAAATCACATTTATTCTTCTCACCTACCATTGT...

Protein

Download Protein FASTA

489 aa · LXL04_001766|LXL04_001766|OH1004|PROTEIN

MGFFFMVILVGFVFGLILNHYLPLLFLKNKKLGALPRGSFGYLPLLGETLAFLKPHPSTTIGSFLQDHCSRYGKVFKSHLFFSPTIVSCDQELNYFILQNEDKLFECSYPKPIHDVLGKISMLVVVGDTHKRLRNVALSLVSTTKSKPDFLTHIEKTTLQILESWKDKKQIIFCEEARKFTFNIIVKQVLGLTPEEPQTSRILEDFLTFMRGLISFPLYIPGTPYANAVKARIRISASVKQIIKERRRNNNIIYNNDDNI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001766`
TK1151 ID	TkA01G513140
OH-1004 ID	LXL04_001766
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001766

Location Chr01:32993251-32996600 (-)

Description Similar to CYP724B1: Cytochrome P450 724B1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50660`	Catalyzes the C22-alpha-hydroxylation step in brassinosteroids biosynthesis.	Arabidopsis CYP90B1 catalyses the early C-22 hydroxylation of C27, C28 and C29 sterols.2006 · DOI: 10.1111/j.1365-313x.2005.02639.x The DWF4 gene of Arabidopsis encodes a cytochrome P450 that mediates multiple 22alpha-hydroxylation steps in brassinosteroid biosynthesis.1998 · DOI: 10.1105/tpc.10.2.231

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0469800`	Involved in brassinosteroid biosynthesis.	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length.2005 · DOI: 10.1105/tpc.104.024950 Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice.2006 · DOI: 10.1038/nbt1173
`UniProt: B8AV52`	Involved in brassinosteroid biosynthesis (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001766 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006694 steroid biosynthetic process Biological Process

GO:0008203 cholesterol metabolic process Biological Process

GO:0009647 skotomorphogenesis Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0010268 brassinosteroid homeostasis Biological Process

GO:0010358 leaf shaping Biological Process

GO:0016125 sterol metabolic process Biological Process

GO:0016132 brassinosteroid biosynthetic process Biological Process

GO:0016135 saponin biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT3G50660

dosa:Os04g0469800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.891

Rank 1 · LXL04_001766 · OH-1004

Golgi apparatus0.058

Rank 2 · LXL04_001766 · OH-1004

Plastid0.036

Rank 3 · LXL04_001766 · OH-1004

Cell membrane0.034

Rank 4 · LXL04_001766 · OH-1004

Cytoplasm0.034

Rank 5 · LXL04_001766 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45043-468 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001766	`PF00067.28`	p450	43	468	1.1e-59	203.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64989`	Arabidopsis thaliana	Steroid (22S)-hydroxylase	43.376%	Swiss-Prot	moderate database homology
`Q6F4F5`	Oryza sativa subsp. japonica	Cytochrome P450 724B1	63.579%	Swiss-Prot	strong database homology
`B8AV52`	Oryza sativa subsp. indica	Cytochrome P450 724B1	63.579%	Swiss-Prot	strong database homology

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