Gene Card
Gene overview
cDNA / CDS / Protein Sequences
752 bp · LXL04_001728|LXL04_001728|OH1004|cDNA
TGATTGCAGATTGAGAATGAATTTGGTTCATTTGGAGTTGACAAAGACTATCTGCACCATCTGGTCAACTTAGCACGGTCACATCTCGGGGACGACCTAATTTTTTGTTTCTTTCTAAAAGATGGGAAGGTTTATCGAACTTTGAGTCTAATAATACCCATTTTCTTGATAGAATTTTACATGGGTTGGCTTACACATTGGGGAGAGAATATGGCTAAAACTGATGCTTTTTCTACAGCATCTGCCCTGGAAATTATTCT...
732 bp · LXL04_001728|LXL04_001728|OH1004|CDS
TTGCAGATTGAGAATGAATTTGGTTCATTTGGAGTTGACAAAGACTATCTGCACCATCTGGTCAACTTAGCACGGTCACATCTCGGGGACGACCTAATTTTTTGTTTCTTTCTAAAAGATGGGAAGGTTTATCGAACTTTGAGTCTAATAATACCCATTTTCTTGATAGAATTTTACATGGGTTGGCTTACACATTGGGGAGAGAATATGGCTAAAACTGATGCTTTTTCTACAGCATCTGCCCTGGAAATTATTCTGTC...
Protein
Download Protein FASTA243 aa · LXL04_001728|LXL04_001728|OH1004|PROTEIN
MQIENEFGSFGVDKDYLHHLVNLARSHLGDDLIFCFFLKDGKVYRTLSLIIPIFLIEFYMGWLTHWGENMAKTDAFSTASALEIILSRNGSAMLYMAHGGTNFGFYNGANAQESESNYIADLTSYDYDVPISESGDVDGAKFKALRSVIAMYSAASLPPVPKNNEKTGYGGIKLEKTSSLFDILDSNLLTKAIESDNPISMEAAGQMFGFLLYTSEYTAKGKESTLSIPKVPIEPKCMLHAFL
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001728 |
|---|---|
| TK1151 ID | TkA01G516060 |
| OH-1004 ID | LXL04_001728 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.400 |
| Protein coverage (%) | TK1151 99.590 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001728 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:32074647-32076313 (+) | ||||||||||||
| Description | Similar to BGAL17: Beta-galactosidase 17 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0005975 carbohydrate metabolic process Biological Process GO:0006516 glycoprotein catabolic process Biological Process GO:0006689 ganglioside catabolic process Biological Process GO:0019388 galactose catabolic process Biological Process GO:0042340 keratan sulfate proteoglycan catabolic process Biological Process GO:0051413 response to cortisone Biological Process GO:1904016 response to Thyroglobulin triiodothyronine Biological Process GO:0005576 extracellular region Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005764 lysosome Cellular Component GO:0005773 vacuole Cellular Component GO:0009507 chloroplast Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT1G72990 ddi:DDB_G0290217 dosa:Os05g0539400 hsa:2720 pon:100173272 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01301.26Glyco_hydro_3548-151 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001728 | PF01301.26 | Glyco_hydro_35 | 48 | 151 | 5e-32 | 112.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.