LXL04_001669 | RubberDandelionOmics

Gene overview

LXL04_001669

Reference: OH-1004 Chr: Chr01 Coordinates: 31032568-31034049 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1482 bp · LXL04_001669|LXL04_001669|OH1004|cDNA

ATGGTCTATAAATGTCTTTTACCTTTCTCTTTACACTTCCAACTATTCCAATCTTTATCTTACTTCCTAAAAACACCTTCCAATCATTCAATCTTTCTTGGAGTTCCATCATTCAAAGAAAAACCAGACGCCATTTCTTACTTCGAATTGCTTATCATGGCGAACGAGAAGTCCCGTGATCCATTGTTACCGGAGGAAAACTCTACCCACCGGCGAAAGAAGCTCGGAGTGCTTTTCCACACCTCCGAACCTAACATTAT...

CDS

Download CDS FASTA

1482 bp · LXL04_001669|LXL04_001669|OH1004|CDS

ATGGTCTATAAATGTCTTTTACCTTTCTCTTTACACTTCCAACTATTCCAATCTTTATCTTACTTCCTAAAAACACCTTCCAATCATTCAATCTTTCTTGGAGTTCCATCATTCAAAGAAAAACCAGACGCCATTTCTTACTTCGAATTGCTTATCATGGCGAACGAGAAGTCCCGTGATCCATTGTTACCGGAGGAAAACTCTACCCACCGGCGAAAGAAGCTCGGAGTGCTTTTCCACACCTCCGAACCTAACATTAT...

Protein

Download Protein FASTA

493 aa · LXL04_001669|LXL04_001669|OH1004|PROTEIN

MVYKCLLPFSLHFQLFQSLSYFLKTPSNHSIFLGVPSFKEKPDAISYFELLIMANEKSRDPLLPEENSTHRRKKLGVLFHTSEPNIIFPAGEEQQEASTSSHHHNSNVSIRNPSLSPNMSPVNYFMSPLHQTSPFSKSPWQWNLSNMNAQGGNQTTGLIGSLVREEGHVYSLAASGDLLYTGSDSKNIRVWRNLAEFSGFKSSSGLVKAIVVSRDRIFTGHQDGKIRVWKFSDSMRKAHKRIGSLPTTMDFIKSSINPGN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001669`
TK1151 ID	TkA01G519940
OH-1004 ID	LXL04_001669
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_001669

Location Chr01:31032568-31034049 (-)

Description Similar to JGB: Protein JINGUBANG

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26490`	Negative regulator of pollen germination.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001669 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000281 mitotic cytokinesis Biological Process

GO:0006935 chemotaxis Biological Process

GO:0009846 pollen germination Biological Process

GO:0031037 myosin II filament disassembly Biological Process

GO:1903013 response to differentiation-inducing factor 1 Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005826 actomyosin contractile ring Cellular Component

GO:0005938 cell cortex Cellular Component

GO:0032154 cleavage furrow Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT2G26490

ddi:DDB_G0289115

ddi:DDB_G0290687

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.404

Rank 1 · LXL04_001669 · OH-1004

Nucleus0.404

Rank 2 · LXL04_001669 · OH-1004

Cell membrane0.173

Rank 3 · LXL04_001669 · OH-1004

Lysosome / Vacuole0.082

Rank 4 · LXL04_001669 · OH-1004

Golgi apparatus0.068

Rank 5 · LXL04_001669 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24017.3Beta-prop_SCAP149-393 aa

PF25175.2Beta-prop_WDR5173-396 aa

PF24807.2WD40_CDC20-Fz206-344 aa

PF25391.2WD40_Gbeta270-434 aa

PF25174.2Beta-prop_THOC3273-456 aa

PF24817.2WD40_WDHD1_1st273-317 aa

PF25173.2Beta-prop_WDR3_1st275-345 aa

PF25047.1Beta-prop_TEP1_2nd275-347 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001669	`PF24017.3`	Beta-prop_SCAP	149	393	9.5e-17	61.7
LXL04_001669	`PF25175.2`	Beta-prop_WDR5	173	396	8.8e-29	101.4
LXL04_001669	`PF24807.2`	WD40_CDC20-Fz	206	344	1.3e-21	77.9
LXL04_001669	`PF25391.2`	WD40_Gbeta	270	434	4.8e-15	56.1
LXL04_001669	`PF25174.2`	Beta-prop_THOC3	273	456	8.3e-26	91.3
LXL04_001669	`PF24817.2`	WD40_WDHD1_1st	273	317	7.9e-20	71.9
LXL04_001669	`PF25173.2`	Beta-prop_WDR3_1st	275	345	3.6e-33	115.5
LXL04_001669	`PF25047.1`	Beta-prop_TEP1_2nd	275	347	2e-19	70.5
LXL04_001669	`PF24807.2`	WD40_CDC20-Fz	277	415	1.3e-21	77.9
LXL04_001669	`PF24805.2`	EIF3I	278	396	1.6e-13	51.2
LXL04_001669	`PF20426.5`	NBCH_WD40	278	347	1.4e-09	38.0
LXL04_001669	`PF24814.2`	WD40_Prp19	279	395	5.8e-25	88.6
LXL04_001669	`PF25172.2`	Beta-prop_WDR3_2nd	279	394	1.7e-21	77.4
LXL04_001669	`PF24796.2`	WDR55	281	344	5.3e-15	56.0
LXL04_001669	`PF23414.2`	Beta-prop_EML_2	282	438	4e-13	50.1
LXL04_001669	`PF23381.2`	Beta-prop_IFT122_1st	288	395	1.8e-23	84.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48716`	Arabidopsis thaliana	Protein JINGUBANG	57.639%	Swiss-Prot	strong database homology

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