Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1845 bp · LXL04_001632|LXL04_001632|OH1004|cDNA
ATGAATTTTGCTGAGTTGCTTTCACCAAATGCTGCAAACAATGTTAAAGCACCTAAAAGGCTTAGACCCAAACCAAAACCCCAACCCCAACCAAAATCCACACCTACCCCTCCACCACAGCCTACAAATAATGAGATTATAACAAGGACCGAAGAAGAACAAACTGTTGAAATTAACCAAATTTCTGAAAATACCAATAATGATTGGCAGTCTTCATTTGAAAAACCACATGAAGAGAATGCTGAACCTTTTATAACATT...
1845 bp · LXL04_001632|LXL04_001632|OH1004|CDS
ATGAATTTTGCTGAGTTGCTTTCACCAAATGCTGCAAACAATGTTAAAGCACCTAAAAGGCTTAGACCCAAACCAAAACCCCAACCCCAACCAAAATCCACACCTACCCCTCCACCACAGCCTACAAATAATGAGATTATAACAAGGACCGAAGAAGAACAAACTGTTGAAATTAACCAAATTTCTGAAAATACCAATAATGATTGGCAGTCTTCATTTGAAAAACCACATGAAGAGAATGCTGAACCTTTTATAACATT...
Protein
Download Protein FASTA614 aa · LXL04_001632|LXL04_001632|OH1004|PROTEIN
MNFAELLSPNAANNVKAPKRLRPKPKPQPQPKSTPTPPPQPTNNEIITRTEEEQTVEINQISENTNNDWQSSFEKPHEENAEPFITLESLNDILPQSTTVAGDSPPVTVTETQTNYVSVDGNVENGKGPTEADLESFAQIDPLTGDEASIFNDNQDFQIENLSSVSNDAENSHFWEPLDMSAGPKVEKFKPKAPTRKVENISSEMDYMDNESVPMFSPDELLGSSYNGITDSIPVPDFHVNEEQPPMSQVDSGIRSEHLD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001632 |
|---|---|
| TK1151 ID | TkA01G521140 |
| OH-1004 ID | LXL04_001632 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001632 |
|---|---|
| Location | Chr01:30421983-30424702 (-) |
| Description | Similar to bdp1: Transcription factor TFIIIB component B'' (Schizosaccharomyces pombe (strain 972 / ATCC 24843) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0001112 DNA-templated transcription open complex formation Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006359 regulation of transcription by RNA polymerase III Biological Process GO:0045945 positive regulation of transcription by RNA polymerase III Biological Process GO:0070898 RNA polymerase III preinitiation complex assembly Biological Process GO:0000126 transcription factor TFIIIB complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0000995 RNA polymerase III general transcription initiation factor activity Molecular Function GO:0001156 TFIIIC-class transcription factor complex binding Molecular Function GO:0003677 DNA binding Molecular Function |
| KEGG gene cross-reference | hsa:55814 mmu:544971 sce:YNL039W spo:2538909 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF15963.12Myb_DNA-bind_7460-541 aaPF00249.38Myb_DNA-binding465-508 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001632 | PF15963.12 | Myb_DNA-bind_7 | 460 | 541 | 1.4e-25 | 89.6 |
| LXL04_001632 | PF00249.38 | Myb_DNA-binding | 465 | 508 | 2.6e-10 | 40.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.