LXL04_001052 | RubberDandelionOmics

Gene overview

LXL04_001052

Reference: OH-1004 Chr: Chr01 Coordinates: 19351927-19356667 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2121 bp · LXL04_001052|LXL04_001052|OH1004|cDNA

ATGGAGAACAAGAAACGCCATGAACAACCTACAAACTCCGTGAGAAGAAGTTTGAAGAGGAAGCTGGAGGACGAATTCATCGTGGATCGAAAGATCACCTCATCTGATGACGCGGCTCAACAAGATCTAGTATCTGAAGTTCGTGCTCAGGTCGAAATCCTCGACTCTACCTTTTCATCGATCGAAGCGGATCGTGCTCTAGTCAAACGTTCAATTCATATCCTCTCCGAGCTCGCGAAGAACGAGGATATCGTGAATTT...

CDS

Download CDS FASTA

2121 bp · LXL04_001052|LXL04_001052|OH1004|CDS

ATGGAGAACAAGAAACGCCATGAACAACCTACAAACTCCGTGAGAAGAAGTTTGAAGAGGAAGCTGGAGGACGAATTCATCGTGGATCGAAAGATCACCTCATCTGATGACGCGGCTCAACAAGATCTAGTATCTGAAGTTCGTGCTCAGGTCGAAATCCTCGACTCTACCTTTTCATCGATCGAAGCGGATCGTGCTCTAGTCAAACGTTCAATTCATATCCTCTCCGAGCTCGCGAAGAACGAGGATATCGTGAATTT...

Protein

Download Protein FASTA

706 aa · LXL04_001052|LXL04_001052|OH1004|PROTEIN

MENKKRHEQPTNSVRRSLKRKLEDEFIVDRKITSSDDAAQQDLVSEVRAQVEILDSTFSSIEADRALVKRSIHILSELAKNEDIVNLIVESGAVPALVRHLQAPQSKEDVAGPRPYEHEVEKGSAFTLGLLAIKPEHQQLIVDAGALPHLVALLKRHRDGQTSRAVNGVIRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFIDAKVQRAAAGALRTLAFKNDENKTQIVDCNALPTLILMLRSEDAAIHYEAVGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001052`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_001052

Location Chr01:19351927-19356667 (+)

Description Similar to ARIA: ARM REPEAT PROTEIN INTERACTING WITH ABF2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19330`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	ARIA, an Arabidopsis arm repeat protein interacting with a transcriptional regulator of abscisic acid-responsive gene expression, is a novel abscisic acid signaling component.2004 · DOI: 10.1104/pp.104.049189
`At5g13060`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription.2008 · DOI: 10.1038/emboj.2008.191

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001052 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000011 vacuole inheritance Biological Process

GO:0000045 autophagosome assembly Biological Process

GO:0000425 pexophagy Biological Process

GO:0006261 DNA-templated DNA replication Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0034517 ribophagy Biological Process

GO:0034727 piecemeal microautophagy of the nucleus Biological Process

GO:0042127 regulation of cell population proliferation Biological Process

KEGG gene cross-reference

aor:AO090113000014

ath:AT5G13060

ath:AT5G19330

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.552

Rank 1 · LXL04_001052 · OH-1004

Nucleus0.393

Rank 2 · LXL04_001052 · OH-1004

Cell membrane0.110

Rank 3 · LXL04_001052 · OH-1004

Endoplasmic reticulum0.054

Rank 4 · LXL04_001052 · OH-1004

Mitochondrion0.053

Rank 5 · LXL04_001052 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30701.1ARMC6126-280 aa

PF24768.2ARM_ARMC5133-386 aa

PF00514.30Arm135-162 aa

PF24714.2TOR1L1_N137-312 aa

PF25598.2ARM_PUB175-408 aa

PF00514.30Arm191-223 aa

PF00514.30Arm226-265 aa

PF28415.2SIL1_FES1_HPBP1_C230-300 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001052	`PF30701.1`	ARMC6	126	280	3.5e-12	46.3
LXL04_001052	`PF24768.2`	ARM_ARMC5	133	386	2.2e-23	83.8
LXL04_001052	`PF00514.30`	Arm	135	162	6.3e-48	160.1
LXL04_001052	`PF24714.2`	TOR1L1_N	137	312	9.1e-07	29.2
LXL04_001052	`PF25598.2`	ARM_PUB	175	408	7.8e-13	49.2
LXL04_001052	`PF00514.30`	Arm	191	223	6.3e-48	160.1
LXL04_001052	`PF00514.30`	Arm	226	265	6.3e-48	160.1
LXL04_001052	`PF28415.2`	SIL1_FES1_HPBP1_C	230	300	5.8e-11	43.0
LXL04_001052	`PF13513.13`	HEAT_EZ	296	348	1.1e-09	39.3
LXL04_001052	`PF00514.30`	Arm	311	349	6.3e-48	160.1
LXL04_001052	`PF00651.38`	BTB	533	634	1.6e-24	86.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`B9DHT4`	Arabidopsis thaliana	ARM REPEAT PROTEIN INTERACTING WITH ABF2	75.393%	Swiss-Prot	strong database homology
`B7U179`	Arabidopsis thaliana	ARMADILLO BTB ARABIDOPSIS PROTEIN 1	61.354%	Swiss-Prot	strong database homology

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