LXL04_000800 | RubberDandelionOmics

Gene overview

LXL04_000800

Reference: OH-1004 Chr: Chr01 Coordinates: 14825569-14827510 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1563 bp · LXL04_000800|LXL04_000800|OH1004|cDNA

ATGGACCATACCCAGAGAATGGGTTTAATCTGCTTCATGCCCATTTTCTTTCTCCTGTTTTCCACATCTAGTGCAGCGATTGCAGCGAAACCAGGGGTAAACTATGGTCAACTCGGAAACAACCTCCCTCATCCGAGCAAATCCGTTGAGCTCATCAAATCCCTAAAAGCCGGCCGTGTTAAGATCTACGATGCGAACCCGAAAATCCTTCAGGCACTTGCGAACACCAATATTCAAATATCGATAATGGTGCCGAATGA...

CDS

Download CDS FASTA

1563 bp · LXL04_000800|LXL04_000800|OH1004|CDS

ATGGACCATACCCAGAGAATGGGTTTAATCTGCTTCATGCCCATTTTCTTTCTCCTGTTTTCCACATCTAGTGCAGCGATTGCAGCGAAACCAGGGGTAAACTATGGTCAACTCGGAAACAACCTCCCTCATCCGAGCAAATCCGTTGAGCTCATCAAATCCCTAAAAGCCGGCCGTGTTAAGATCTACGATGCGAACCCGAAAATCCTTCAGGCACTTGCGAACACCAATATTCAAATATCGATAATGGTGCCGAATGA...

Protein

Download Protein FASTA

520 aa · LXL04_000800|LXL04_000800|OH1004|PROTEIN

MDHTQRMGLICFMPIFFLLFSTSSAAIAAKPGVNYGQLGNNLPHPSKSVELIKSLKAGRVKIYDANPKILQALANTNIQISIMVPNEIITAMAPNQSLADEWVKTNVVPFYPKTMIRYVLVGNEILSQPDNVTWFNLVPAMRRIRKALVSHKFKKIKVGTPLAIDCLEASFPPSSGKFRSSVSESVLKPLLQFIHRTKSFFFIDVYTYFAWISDPVNIKLDYALLQPNASTYTDPVTGLLYTNMLEQMLDALYFAMKDAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000800`
TK1151 ID	TkA01G586560
OH-1004 ID	LXL04_000800
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.400
Protein coverage (%)	TK1151 99.360 / OH-1004 89.615 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000800

Location Chr01:14825569-14827510 (+)

Description Similar to A6: Probable glucan endo-1,3-beta-glucosidase A6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14080`	Probable beta-1,3-glucanase that may be involved in the degradation of callose walls around the microspore tetrad during pollen development (Probable).	No verified direct reference in this release
`At5g56590`	Glucan endo-1,3-beta-glucosidase 13.	No verified direct reference in this release
`At4g29360`	Glucan endo-1,3-beta-glucosidase 12.	No verified direct reference in this release
`At1g66250`	Glucan endo-1,3-beta-glucosidase 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000800 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006076 (1->3)-beta-D-glucan catabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010584 pollen exine formation Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G66250

ath:AT4G14080

ath:AT4G29360

ath:AT5G56590

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.372

Rank 1 · LXL04_000800 · OH-1004

Cell membrane0.252

Rank 2 · LXL04_000800 · OH-1004

Endoplasmic reticulum0.117

Rank 3 · LXL04_000800 · OH-1004

Lysosome / Vacuole0.092

Rank 4 · LXL04_000800 · OH-1004

Cytoplasm0.088

Rank 5 · LXL04_000800 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00332.25Glyco_hydro_1732-352 aa

PF07983.19X8379-451 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000800	`PF00332.25`	Glyco_hydro_17	32	352	2.9e-90	303.7
LXL04_000800	`PF07983.19`	X8	379	451	8e-18	65.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q06915`	Arabidopsis thaliana	Probable glucan endo-1,3-beta-glucosidase A6	51.992%	Swiss-Prot	strong database homology
`Q9FJU9`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 13	39.545%	Swiss-Prot	moderate database homology
`Q8VYE5`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 12	37.500%	Swiss-Prot	moderate database homology
`Q9C7U5`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 2	36.697%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card