LXL04_000383 | RubberDandelionOmics

Gene overview

LXL04_000383

Reference: OH-1004 Chr: Chr01 Coordinates: 7005271-7010372 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

816 bp · LXL04_000383|LXL04_000383|OH1004|cDNA

AtgttgcctatatgtgtacaaaaaaaagttggatgcctagatgtgtacaaactcaATAGTTCGTTACTCTCACAAGTTGTGTCTAACAGAAAAAAGGAGATGGCGTATGCAGCTATGAAACCAACAAAACCAGGGCTAGAAGAGCCTCAAGAACAGCTTCACAAGATCAGAATTACTCTCTCGTCCAAGAATGTTAAGAATCTAGAGAAAGTGTGTGCTGATTTGGTACGTGGTGCAAAGGACAAGAAGTTGAGGGTGAA...

CDS

Download CDS FASTA

816 bp · LXL04_000383|LXL04_000383|OH1004|CDS

ATGTTGCCTATATGTGTACAAAAAAAAGTTGGATGCCTAGATGTGTACAAACTCAATAGTTCGTTACTCTCACAAGTTGTGTCTAACAGAAAAAAGGAGATGGCGTATGCAGCTATGAAACCAACAAAACCAGGGCTAGAAGAGCCTCAAGAACAGCTTCACAAGATCAGAATTACTCTCTCGTCCAAGAATGTTAAGAATCTAGAGAAAGTGTGTGCTGATTTGGTACGTGGTGCAAAGGACAAGAAGTTGAGGGTGAA...

Protein

Download Protein FASTA

271 aa · LXL04_000383|LXL04_000383|OH1004|PROTEIN

MLPICVQKKVGCLDVYKLNSSLLSQVVSNRKKEMAYAAMKPTKPGLEEPQEQLHKIRITLSSKNVKNLEKVCADLVRGAKDKKLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEMAYAAMKPTKPGLEEPQEQLHKIRITLSSKNVKNLEKVCADLVRGAKDKKLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000383`
TK1151 ID	TkA01G615900
OH-1004 ID	LXL04_000383
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 45.018 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000383

Location Chr01:7005271-7010372 (-)

Description Similar to RPS20B: 40S ribosomal protein S20-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g47370`	Small ribosomal subunit protein uS10y.	No verified direct reference in this release
`UniProt: P49200`	Small ribosomal subunit protein uS10z/uS10x.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0134000`	Small ribosomal subunit protein uS10.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000383 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0005730 nucleolus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0022627 cytosolic small ribosomal subunit Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

KEGG gene cross-reference

ath:AT3G45030

ath:AT3G47370

ath:AT5G62300

dosa:Os06g0134000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.448

Rank 1 · LXL04_000383 · OH-1004

Nucleus0.354

Rank 2 · LXL04_000383 · OH-1004

Mitochondrion0.337

Rank 3 · LXL04_000383 · OH-1004

Cell membrane0.041

Rank 4 · LXL04_000383 · OH-1004

Endoplasmic reticulum0.033

Rank 5 · LXL04_000383 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00338.28Ribosomal_S1057-150 aa

PF00338.28Ribosomal_S10173-267 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000383	`PF00338.28`	Ribosomal_S10	57	150	1.7e-58	195.7
LXL04_000383	`PF00338.28`	Ribosomal_S10	173	267	1.7e-58	195.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9STY6`	Arabidopsis thaliana	Small ribosomal subunit protein uS10y	90.984%	Swiss-Prot	weak database homology
`P49200`	Arabidopsis thaliana	Small ribosomal subunit protein uS10z/uS10x	90.909%	Swiss-Prot	weak database homology
`P35686`	Oryza sativa subsp. japonica	Small ribosomal subunit protein uS10	80.645%	Swiss-Prot	weak database homology

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