同源/共线性证据

跨参考基因组查看同源关系与共线性区块证据。

证据边界:TK1151 和 OH-1004 是同一物种的不同材料,本页展示两个参考基因组之间的同源与共线性 ID 对照,不是同一品种/同一基因组版本升级。区块来自 DIAMOND RBH 与坐标顺序锚点,后续仍可用 MCScanX/JCVI 继续复核。也支持直接输入 JCVI_TKOH_ 开头的区块 ID。

全局区块概览

共线性区块
427
ID 对照记录
84884
高置信区块
302
中置信区块
125
参考材料组装基因数gap 数端粒扫描
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

查询解析

输入 ID
JCVI_TKOH_00413
解析类型
区块 ID
ID 对照 + 共线性联合证据
解析到的基因
无
未能直接匹配到橡胶草基因目录
关联结果
0 / 1 / 17
对照 / 区块 / 锚点
最佳区块: JCVI_TKOH_00413

当前输入已解析为共线性区块 ID,下面优先展示区块范围和锚点基因。

线性共线性图

当前查询的最佳共线性区块以线性 ribbon 形式展示。

JCVI_TKOH_00413 ChrUn 23048964-23303974 Chr06 720975-1077593 mixed High 17 anchors
ChrUn 23048964-23303974 Chr06 720975-1077593 JCVI_TKOH_00413 · 17 gene pairs TkAUNG080880 | LXL04_026635 | 100.0% | RBH_high_identity_coverage_local_synteny_minor_chr_pair | Probable TkAUNG080890 | LXL04_026636 | 100.0% | RBH_high_identity_coverage_local_synteny_minor_chr_pair | Probable TkAUNG080900 | LXL04_026637 | 99.9% | multi_source_to_OH1004 | Complex TkAUNG080980 | LXL04_026640 | 99.5% | RBH_high_identity_coverage_local_synteny_minor_chr_pair | Probable TkAUNG081120 | LXL04_026641 | 99.6% | RBH_high_identity_coverage_local_synteny_minor_chr_pair | Probable TkAUNG081130 | LXL04_026642 | 99.5% | RBH_below_probable_coverage_or_synteny_threshold | Review TkAUNG081150 | LXL04_026643 | 100.0% | multi_source_to_OH1004 | Complex TkAUNG081160 | LXL04_026644 | 100.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkAUNG081170 | LXL04_026645 | 97.4% | RBH_high_identity_coverage_local_synteny_minor_chr_pair | Probable TkAUNG081210 | LXL04_026647 | 96.9% | sequence_supported_annotation_or_model_conflict | Review TkAUNG081500 | LXL04_026649 | 93.2% | RBH_sequence_supported | Probable TkAUNG081510 | LXL04_026650 | 100.0% | RBH_high_identity_coverage_local_synteny_minor_chr_pair | Probable
High Medium Other 仅绘制前 12 条锚点
锚点表按页展示,TSV 下载包含当前查询的全部锚点;上方 ribbon 仅展示当前区块的部分线性共线性骨架。

当前查询证据

当前查询没有可展示的 ID 对照记录。

共线性证据

区块查询位置目标位置方向当前映射锚点数置信等级备注
JCVI_TKOH_00413 ChrUn:23048964-23303974 Chr06:720975-1077593 mixed 17 高置信 Formal JCVI synteny block from rebuilt ID map pipeline.

区块锚点基因

锚点总数: 17 · 当前范围 1–17 · 页码 1/1

TkAUNG080880 → LXL04_026635
100.0%
TkAUNG080890 → LXL04_026636
100.0%
TkAUNG080900 → LXL04_026637
99.9%
TkAUNG080980 → LXL04_026640
99.5%
TkAUNG081120 → LXL04_026641
99.6%
TkAUNG081130 → LXL04_026642
99.5%
TkAUNG081150 → LXL04_026643
100.0%
TkAUNG081160 → LXL04_026644
100.0%
TkAUNG081170 → LXL04_026645
97.4%
TkAUNG081210 → LXL04_026647
96.9%
TkAUNG081500 → LXL04_026649
93.2%
TkAUNG081510 → LXL04_026650
100.0%
TK1151 基因OH-1004 基因区块一致性覆盖度置信等级
TkAUNG080880LXL04_026635JCVI_TKOH_00413100.0100.0 / 98.571Probable
TkAUNG080890LXL04_026636JCVI_TKOH_00413100.0100.0 / 100.0Probable
TkAUNG080900LXL04_026637JCVI_TKOH_0041399.999.175 / 89.405Complex
TkAUNG080980LXL04_026640JCVI_TKOH_0041399.5100.0 / 100.0Probable
TkAUNG081120LXL04_026641JCVI_TKOH_0041399.6100.0 / 100.0Probable
TkAUNG081130LXL04_026642JCVI_TKOH_0041399.591.297 / 63.938待复核
TkAUNG081150LXL04_026643JCVI_TKOH_00413100.0100.0 / 100.0Complex
TkAUNG081160LXL04_026644JCVI_TKOH_00413100.072.65 / 59.028待复核
TkAUNG081170LXL04_026645JCVI_TKOH_0041397.4100.0 / 100.0Probable
TkAUNG081210LXL04_026647JCVI_TKOH_0041396.990.345 / 31.566待复核
TkAUNG081500LXL04_026649JCVI_TKOH_0041393.2100.0 / 100.0Probable
TkAUNG081510LXL04_026650JCVI_TKOH_00413100.0100.0 / 100.0Probable
TkAUNG081520LXL04_026651JCVI_TKOH_00413100.0100.0 / 100.0Probable
TkAUNG081540LXL04_026652JCVI_TKOH_0041399.393.103 / 80.838Probable
TkAUNG081560LXL04_026653JCVI_TKOH_0041396.5100.0 / 76.451Probable
TkAUNG081570LXL04_026654JCVI_TKOH_0041398.999.581 / 47.337待复核
TkAUNG081810LXL04_026656JCVI_TKOH_0041395.981.997 / 49.822待复核