Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00239
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 16
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00239The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00239 |
Chr05:68859415-71469116 | Chr04:100354422-102753803 | mixed | 16 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 16 · Showing 1–16 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA05G278520 | LXL04_020635 | JCVI_TKOH_00239 | 100.0 | 49.51 / 26.72 | Review |
TkA05G278530 | LXL04_020635 | JCVI_TKOH_00239 | 97.8 | 22.167 / 11.905 | Complex |
TkA05G278550 | LXL04_020636 | JCVI_TKOH_00239 | 97.8 | 100.0 / 100.0 | Complex |
TkA05G279400 | LXL04_020642 | JCVI_TKOH_00239 | 100.0 | 85.915 / 99.187 | Review |
TkA05G279420 | LXL04_020645 | JCVI_TKOH_00239 | 80.8 | 90.244 / 88.772 | Review |
TkA05G280710 | LXL04_020645 | JCVI_TKOH_00239 | 75.6 | 100.0 / 69.825 | Complex |
TkA05G282200 | LXL04_020647 | JCVI_TKOH_00239 | 100.0 | 100.0 / 100.0 | Strict |
TkA05G284340 | LXL04_020651 | JCVI_TKOH_00239 | 100.0 | 84.528 / 74.419 | Complex |
TkA05G285050 | LXL04_020652 | JCVI_TKOH_00239 | 100.0 | 100.0 / 28.307 | Review |
TkA05G285290 | LXL04_020654 | JCVI_TKOH_00239 | 98.5 | 100.0 / 27.917 | Review |
TkA05G286310 | LXL04_020655 | JCVI_TKOH_00239 | 52.8 | 81.915 / 19.432 | Complex |
TkA05G287010 | LXL04_020657 | JCVI_TKOH_00239 | 99.0 | 100.0 / 100.0 | Complex |
TkA05G287460 | LXL04_020655 | JCVI_TKOH_00239 | 93.9 | 100.0 / 68.013 | Review |
TkA05G288160 | LXL04_020657 | JCVI_TKOH_00239 | 100.0 | 100.0 / 100.0 | Complex |
TkA05G288950 | LXL04_020661 | JCVI_TKOH_00239 | 86.3 | 98.131 / 78.523 | Review |
TkA05G289240 | LXL04_020663 | JCVI_TKOH_00239 | 97.8 | 97.713 / 85.126 | Strict |