Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00084
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 11
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00084The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00084 |
Chr02:52912997-54136595 | Chr03:85647098-87493569 | mixed | 11 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 11 · Showing 1–11 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA02G207280 | LXL04_015809 | JCVI_TKOH_00084 | 96.6 | 100.0 / 100.0 | Strict |
TkA02G207290 | LXL04_015810 | JCVI_TKOH_00084 | 99.1 | 100.0 / 100.0 | Strict |
TkA02G208050 | LXL04_015811 | JCVI_TKOH_00084 | 97.4 | 71.698 / 9.819 | Complex |
TkA02G208740 | LXL04_015815 | JCVI_TKOH_00084 | 99.9 | 100.0 / 93.046 | Strict |
TkA02G209120 | LXL04_015816 | JCVI_TKOH_00084 | 98.9 | 100.0 / 100.0 | Strict |
TkA02G209910 | LXL04_015819 | JCVI_TKOH_00084 | 92.7 | 95.05 / 44.949 | Review |
TkA02G209960 | LXL04_015820 | JCVI_TKOH_00084 | 89.9 | 95.575 / 22.517 | Review |
TkA02G210350 | LXL04_015821 | JCVI_TKOH_00084 | 97.3 | 100.0 / 100.0 | Strict |
TkA02G210420 | LXL04_015822 | JCVI_TKOH_00084 | 100.0 | 100.0 / 67.956 | Complex |
TkA02G210460 | LXL04_015823 | JCVI_TKOH_00084 | 74.0 | 100.0 / 77.096 | Review |
TkA02G211900 | LXL04_015811 | JCVI_TKOH_00084 | 65.2 | 76.861 / 24.742 | Review |