同源/共线性证据

跨参考基因组查看同源关系与共线性区块证据。

证据边界:TK1151 和 OH-1004 是同一物种的不同材料,本页展示两个参考基因组之间的同源与共线性 ID 对照,不是同一品种/同一基因组版本升级。区块来自 DIAMOND RBH 与坐标顺序锚点,后续仍可用 MCScanX/JCVI 继续复核。也支持直接输入 JCVI_TKOH_ 开头的区块 ID。

全局区块概览

共线性区块
427
ID 对照记录
84884
高置信区块
302
中置信区块
125
参考材料组装基因数gap 数端粒扫描
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

查询解析

输入 ID
JCVI_TKOH_00082
解析类型
区块 ID
ID 对照 + 共线性联合证据
解析到的基因
无
未能直接匹配到橡胶草基因目录
关联结果
0 / 1 / 18
对照 / 区块 / 锚点
最佳区块: JCVI_TKOH_00082

当前输入已解析为共线性区块 ID,下面优先展示区块范围和锚点基因。

线性共线性图

当前查询的最佳共线性区块以线性 ribbon 形式展示。

JCVI_TKOH_00082 Chr02 43322023-44366149 Chr03 116264397-117565909 mixed High 18 anchors
Chr02 43322023-44366149 Chr03 116264397-117565909 JCVI_TKOH_00082 · 18 gene pairs TkA02G169570 | LXL04_016277 | 44.3% | multi_source_to_OH1004 | Complex TkA02G169730 | LXL04_016276 | 74.7% | multi_source_to_OH1004 | Complex TkA02G169750 | LXL04_016274 | 97.7% | sequence_supported_annotation_or_model_conflict | Review TkA02G169870 | LXL04_016277 | 80.3% | multi_source_to_OH1004 | Complex TkA02G169960 | LXL04_016274 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA02G170650 | LXL04_016264 | 97.7% | multi_source_to_OH1004 | Complex TkA02G170660 | LXL04_016263 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA02G170840 | LXL04_016255 | 83.6% | multi_source_to_OH1004 | Complex TkA02G170850 | LXL04_016261 | 99.4% | RBH_high_identity_coverage_synteny | Strict TkA02G170880 | LXL04_016260 | 89.0% | multi_source_to_OH1004 | Complex TkA02G170980 | LXL04_016260 | 84.6% | multi_source_to_OH1004 | Complex TkA02G171130 | LXL04_016255 | 100.0% | multi_source_to_OH1004 | Complex
High Medium Other 仅绘制前 12 条锚点
锚点表按页展示,TSV 下载包含当前查询的全部锚点;上方 ribbon 仅展示当前区块的部分线性共线性骨架。

当前查询证据

当前查询没有可展示的 ID 对照记录。

共线性证据

区块查询位置目标位置方向当前映射锚点数置信等级备注
JCVI_TKOH_00082 Chr02:43322023-44366149 Chr03:116264397-117565909 mixed 18 高置信 Formal JCVI synteny block from rebuilt ID map pipeline.

区块锚点基因

锚点总数: 18 · 当前范围 1–18 · 页码 1/1

TkA02G169570 → LXL04_016277
44.3%
TkA02G169730 → LXL04_016276
74.7%
TkA02G169750 → LXL04_016274
97.7%
TkA02G169870 → LXL04_016277
80.3%
TkA02G169960 → LXL04_016274
100.0%
TkA02G170650 → LXL04_016264
97.7%
TkA02G170660 → LXL04_016263
100.0%
TkA02G170840 → LXL04_016255
83.6%
TkA02G170850 → LXL04_016261
99.4%
TkA02G170880 → LXL04_016260
89.0%
TkA02G170980 → LXL04_016260
84.6%
TkA02G171130 → LXL04_016255
100.0%
TK1151 基因OH-1004 基因区块一致性覆盖度置信等级
TkA02G169570LXL04_016277JCVI_TKOH_0008244.397.418 / 70.266Complex
TkA02G169730LXL04_016276JCVI_TKOH_0008274.798.655 / 76.371Complex
TkA02G169750LXL04_016274JCVI_TKOH_0008297.7100.0 / 100.0待复核
TkA02G169870LXL04_016277JCVI_TKOH_0008280.399.206 / 60.24Complex
TkA02G169960LXL04_016274JCVI_TKOH_00082100.0100.0 / 100.0待复核
TkA02G170650LXL04_016264JCVI_TKOH_0008297.788.776 / 71.02Complex
TkA02G170660LXL04_016263JCVI_TKOH_00082100.0100.0 / 94.301待复核
TkA02G170840LXL04_016255JCVI_TKOH_0008283.693.28 / 79.577Complex
TkA02G170850LXL04_016261JCVI_TKOH_0008299.4100.0 / 100.0Strict
TkA02G170880LXL04_016260JCVI_TKOH_0008289.096.277 / 54.593Complex
TkA02G170980LXL04_016260JCVI_TKOH_0008284.6100.0 / 12.651Complex
TkA02G171130LXL04_016255JCVI_TKOH_00082100.095.531 / 80.282Complex
TkA02G171170LXL04_016255JCVI_TKOH_0008277.296.325 / 79.343Complex
TkA02G171400LXL04_016254JCVI_TKOH_0008278.671.852 / 43.46待复核
TkA02G171450LXL04_016253JCVI_TKOH_0008299.2100.0 / 100.0Complex
TkA02G171490LXL04_016249JCVI_TKOH_0008294.0100.0 / 100.0Complex
TkA02G171510LXL04_016246JCVI_TKOH_0008281.1100.0 / 76.891Complex
TkA02G171580LXL04_016245JCVI_TKOH_0008284.095.238 / 79.681Complex