Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00309

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 28

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00309

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00309 Chr07 79616342-81001276 Chr06 91787935-93181984 mixed High 28 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00309`	Chr07:79616342-81001276	Chr06:91787935-93181984	mixed	28	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 28 · Showing 1–28 · Page 1/1

Download All Anchors TSV

TkA07G317650 → LXL04_029531

94.5%

TkA07G318670 → LXL04_029526

99.4%

TkA07G319250 → LXL04_029521

97.8%

TkA07G319550 → LXL04_029520

100.0%

TkA07G319560 → LXL04_029519

77.7%

TkA07G319650 → LXL04_029518

100.0%

TkA07G319910 → LXL04_029517

98.7%

TkA07G320010 → LXL04_029515

87.1%

TkA07G320020 → LXL04_029513

97.4%

TkA07G320030 → LXL04_029512

98.9%

TkA07G320160 → LXL04_029511

98.9%

TkA07G320490 → LXL04_029509

99.8%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA07G317650`	`LXL04_029531`	`JCVI_TKOH_00309`	94.5	100.0 / 100.0	Complex
`TkA07G318670`	`LXL04_029526`	`JCVI_TKOH_00309`	99.4	100.0 / 100.0	Complex
`TkA07G319250`	`LXL04_029521`	`JCVI_TKOH_00309`	97.8	100.0 / 79.61	Complex
`TkA07G319550`	`LXL04_029520`	`JCVI_TKOH_00309`	100.0	100.0 / 100.0	Review
`TkA07G319560`	`LXL04_029519`	`JCVI_TKOH_00309`	77.7	99.668 / 98.201	Complex
`TkA07G319650`	`LXL04_029518`	`JCVI_TKOH_00309`	100.0	100.0 / 100.0	Review
`TkA07G319910`	`LXL04_029517`	`JCVI_TKOH_00309`	98.7	100.0 / 100.0	Complex
`TkA07G320010`	`LXL04_029515`	`JCVI_TKOH_00309`	87.1	92.218 / 78.613	Complex
`TkA07G320020`	`LXL04_029513`	`JCVI_TKOH_00309`	97.4	87.861 / 79.167	Complex
`TkA07G320030`	`LXL04_029512`	`JCVI_TKOH_00309`	98.9	96.809 / 47.314	Review
`TkA07G320160`	`LXL04_029511`	`JCVI_TKOH_00309`	98.9	100.0 / 63.507	Complex
`TkA07G320490`	`LXL04_029509`	`JCVI_TKOH_00309`	99.8	97.528 / 46.318	Review
`TkA07G320500`	`LXL04_029508`	`JCVI_TKOH_00309`	100.0	85.484 / 27.993	Review
`TkA07G320680`	`LXL04_029506`	`JCVI_TKOH_00309`	100.0	44.079 / 26.693	Complex
`TkA07G320870`	`LXL04_029503`	`JCVI_TKOH_00309`	100.0	96.25 / 90.588	Review
`TkA07G321030`	`LXL04_029502`	`JCVI_TKOH_00309`	95.8	100.0 / 100.0	Complex
`TkA07G321090`	`LXL04_029501`	`JCVI_TKOH_00309`	96.4	93.888 / 48.855	Review
`TkA07G321120`	`LXL04_029500`	`JCVI_TKOH_00309`	99.9	100.0 / 100.0	Complex
`TkA07G321260`	`LXL04_029499`	`JCVI_TKOH_00309`	99.1	97.414 / 55.665	Review
`TkA07G321290`	`LXL04_029498`	`JCVI_TKOH_00309`	99.6	100.0 / 100.0	Complex
`TkA07G321300`	`LXL04_029497`	`JCVI_TKOH_00309`	97.0	100.0 / 36.496	Review
`TkA07G321450`	`LXL04_029496`	`JCVI_TKOH_00309`	99.2	100.0 / 100.0	Complex
`TkA07G321640`	`LXL04_029495`	`JCVI_TKOH_00309`	98.1	100.0 / 100.0	Complex
`TkA07G322260`	`LXL04_029489`	`JCVI_TKOH_00309`	98.5	88.636 / 52.279	Review
`TkA07G323070`	`LXL04_029487`	`JCVI_TKOH_00309`	98.8	100.0 / 100.0	Complex
`TkA07G323450`	`LXL04_029479`	`JCVI_TKOH_00309`	100.0	100.0 / 28.29	Review
`TkA07G323470`	`LXL04_029482`	`JCVI_TKOH_00309`	81.2	94.824 / 17.211	Complex
`TkA07G323580`	`LXL04_029479`	`JCVI_TKOH_00309`	100.0	100.0 / 100.0	Review