LXL04_029487 | RubberDandelionOmics

Gene overview

LXL04_029487

Reference: OH-1004 Chr: Chr06 Coordinates: 92025766-92028878 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

726 bp · LXL04_029487|LXL04_029487|OH1004|cDNA

ATGGTTTCTGAAGAAGTTGTCCGTACATCACTTGGTGTCGTAGGAAACATCACTGCAGTTACATTGTTCTTATCAACCGTGCCAACATTTTTCCGTATATGGAAGAAAGGAAGCGTAGAACAATATTCACCAATCCCATATTTAGCATCTTTTTTCAATTGTGGGTTATGGGTGTTGTATGGGATGCCATTTGTGCACCCACACAGCTTACTCGTGGTCACCACCAATGGAGCCGGGGTTGGAATTGAGCTATGCTACTT...

CDS

Download CDS FASTA

726 bp · LXL04_029487|LXL04_029487|OH1004|CDS

ATGGTTTCTGAAGAAGTTGTCCGTACATCACTTGGTGTCGTAGGAAACATCACTGCAGTTACATTGTTCTTATCAACCGTGCCAACATTTTTCCGTATATGGAAGAAAGGAAGCGTAGAACAATATTCACCAATCCCATATTTAGCATCTTTTTTCAATTGTGGGTTATGGGTGTTGTATGGGATGCCATTTGTGCACCCACACAGCTTACTCGTGGTCACCACCAATGGAGCCGGGGTTGGAATTGAGCTATGCTACTT...

Protein

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241 aa · LXL04_029487|LXL04_029487|OH1004|PROTEIN

MVSEEVVRTSLGVVGNITAVTLFLSTVPTFFRIWKKGSVEQYSPIPYLASFFNCGLWVLYGMPFVHPHSLLVVTTNGAGVGIELCYLVIFLMFSDRRNKLRVALVMLVEIFMWGGLILLVLTLVHTTQKRSTIVGIISDAANIVMYASPLSVMKLVITTKSVEYMPFLLSLFCFCNGLCWFLYALFPFDPFIAVPNGIGALLGILQLMLYATFYKSTKKILAARKEKSEMGLAVIEKGDIA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029487`
TK1151 ID	TkA07G323070
OH-1004 ID	LXL04_029487
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029487

Location Chr06:92025766-92028878 (+)

Description Similar to SWEET4: Bidirectional sugar transporter SWEET4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10850`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`At1g66770`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0301100`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`UniProt: A2X3S3`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`UniProt: A2YZ24`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029487 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008643 carbohydrate transport Biological Process

GO:0051260 protein homooligomerization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0051119 sugar transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G66770

ath:AT4G10850

dosa:Os02g0301100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.791

Rank 1 · LXL04_029487 · OH-1004

Cytoplasm0.104

Rank 2 · LXL04_029487 · OH-1004

Endoplasmic reticulum0.078

Rank 3 · LXL04_029487 · OH-1004

Lysosome / Vacuole0.062

Rank 4 · LXL04_029487 · OH-1004

Golgi apparatus0.048

Rank 5 · LXL04_029487 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03083.22MtN3_slv10-97 aa

PF03083.22MtN3_slv133-217 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029487	`PF03083.22`	MtN3_slv	10	97	8.6e-42	141.8
LXL04_029487	`PF03083.22`	MtN3_slv	133	217	8.6e-42	141.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LBF7`	Arabidopsis thaliana	Bidirectional sugar transporter SWEET7	54.464%	Swiss-Prot	strong database homology
`Q9C9M9`	Arabidopsis thaliana	Bidirectional sugar transporter SWEET6	50.417%	Swiss-Prot	strong database homology
`Q6K4V2`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET4	54.661%	Swiss-Prot	strong database homology
`A2X3S3`	Oryza sativa subsp. indica	Bidirectional sugar transporter SWEET4	54.661%	Swiss-Prot	strong database homology
`A2YZ24`	Oryza sativa subsp. indica	Bidirectional sugar transporter SWEET7b	49.561%	Swiss-Prot	moderate database homology

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