TkA07G323070 | RubberDandelionOmics

Gene overview

TkA07G323070

Reference: TK1151 Chr: Chr07 Coordinates: 80850757-80854404 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1022 bp · TkA07G323070|TK1151|cDNA

TATCGACTTCCAAAGCTTTCAAATAAAAAACAAGTTTCAGTAGTTTCACTCAGCAATGGTTTCTGAAGAAGTTGTCCGTACATCACTTGGTGTCGTAGGAAACATCACTGCAGTTACATTGTTCTTATCAACCGTGCCAACATTTTTGCGTATATGGAAGAAAGGAAGCGTAGAACAATATTCACCAGTCCCATATTTAGCATCTTTTTTCAATTGTGGGTTATGGGTGTTGTATGGGATGCCATTTGTGCACCCACACA...

CDS

Download CDS FASTA

726 bp · TkA07G323070|TK1151|CDS

ATGGTTTCTGAAGAAGTTGTCCGTACATCACTTGGTGTCGTAGGAAACATCACTGCAGTTACATTGTTCTTATCAACCGTGCCAACATTTTTGCGTATATGGAAGAAAGGAAGCGTAGAACAATATTCACCAGTCCCATATTTAGCATCTTTTTTCAATTGTGGGTTATGGGTGTTGTATGGGATGCCATTTGTGCACCCACACAGCTTACTCGTGGTCACCACCAATGGAGCCGGGGTTGGAATTGAGCTATGCTACTT...

Protein

Download Protein FASTA

241 aa · TkA07G323070|TK1151|PROTEIN

MVSEEVVRTSLGVVGNITAVTLFLSTVPTFLRIWKKGSVEQYSPVPYLASFFNCGLWVLYGMPFVHPHSLLVVTTNGAGVGIELCYLVIFLMFSDRRNKLRVALVMLVEIFMWGGLILLVLTLVHTTQKRSTIVGIISDVANIVMYASPLSVMKLVITTKSVEYMPFLLSLFCFCNGLCWFLYALFPFDPFIAVPNGIGALLGILQLMLYATFYKSTKKILAARKEKSEMGLAVIEKGDIA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G323070`
TK1151 ID	TkA07G323070
OH-1004 ID	LXL04_029487
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G323070

Location Chr07:80850757-80854404 (-)

Description Similar to SWEET4: Bidirectional sugar transporter SWEET4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10850`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`At1g66770`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2X3S3`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os02g0301100`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`UniProt: A2YZ24`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029487 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008643 carbohydrate transport Biological Process

GO:0051260 protein homooligomerization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0051119 sugar transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G66770

ath:AT4G10850

dosa:Os02g0301100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.785

Rank 1 · TkA07G323070 · TK1151

Cytoplasm0.105

Rank 2 · TkA07G323070 · TK1151

Endoplasmic reticulum0.080

Rank 3 · TkA07G323070 · TK1151

Lysosome / Vacuole0.064

Rank 4 · TkA07G323070 · TK1151

Golgi apparatus0.050

Rank 5 · TkA07G323070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03083MtN3_slv10-97 aa

PF16951MaAIMP_sms105-135 aa

PF03083MtN3_slv133-217 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G323070	`PF03083`	MtN3_slv	10	97	3.4e-42	143.1
TkA07G323070	`PF16951`	MaAIMP_sms	105	135	0.015	15.7
TkA07G323070	`PF03083`	MtN3_slv	133	217	3.4e-42	143.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LBF7`	Arabidopsis thaliana	sp\|Q8LBF7\|SWET7_ARATH Bidirectional sugar transporter SWEET7	55.700%	Swiss-Prot	High
`Q9C9M9`	Arabidopsis thaliana	sp\|Q9C9M9\|SWET6_ARATH Bidirectional sugar transporter SWEET6	50.800%	Swiss-Prot	High
`A2X3S3`	Oryza sativa subsp. indica	sp\|A2X3S3\|SWET4_ORYSI Bidirectional sugar transporter SWEET4	55.100%	Swiss-Prot	High
`Q6K4V2`	Oryza sativa subsp. japonica	sp\|Q6K4V2\|SWET4_ORYSJ Bidirectional sugar transporter SWEET4	55.100%	Swiss-Prot	High
`A2YZ24`	Oryza sativa subsp. indica	sp\|A2YZ24\|SWT7B_ORYSI Bidirectional sugar transporter SWEET7b	51.100%	Swiss-Prot	High

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