Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00178
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 12
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00178The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00178 |
Chr04:91825168-92261303 | Chr01:56339433-56828152 | + | 12 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 12 · Showing 1–12 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA04G365360 | LXL04_002727 | JCVI_TKOH_00178 | 98.5 | 100.0 / 100.0 | Complex |
TkA04G365480 | LXL04_002728 | JCVI_TKOH_00178 | 73.5 | 74.775 / 84.694 | Review |
TkA04G365510 | LXL04_002729 | JCVI_TKOH_00178 | 96.6 | 100.0 / 100.0 | Probable |
TkA04G365530 | LXL04_002731 | JCVI_TKOH_00178 | 99.7 | 100.0 / 100.0 | Probable |
TkA04G365740 | LXL04_002732 | JCVI_TKOH_00178 | 99.6 | 100.0 / 100.0 | Probable |
TkA04G365810 | LXL04_002733 | JCVI_TKOH_00178 | 98.1 | 81.443 / 54.861 | Review |
TkA04G366280 | LXL04_002734 | JCVI_TKOH_00178 | 97.7 | 100.0 / 100.0 | Probable |
TkA04G366340 | LXL04_002735 | JCVI_TKOH_00178 | 99.8 | 100.0 / 56.955 | Review |
TkA04G366360 | LXL04_002735 | JCVI_TKOH_00178 | 90.1 | 73.026 / 32.859 | Complex |
TkA04G366880 | LXL04_002738 | JCVI_TKOH_00178 | 100.0 | 99.667 / 60.772 | Review |
TkA04G366890 | LXL04_002739 | JCVI_TKOH_00178 | 99.6 | 91.873 / 56.277 | Review |
TkA04G367040 | LXL04_002740 | JCVI_TKOH_00178 | 99.2 | 100.0 / 100.0 | Probable |