LXL04_002738 | RubberDandelionOmics

Gene overview

LXL04_002738

Reference: OH-1004 Chr: Chr01 Coordinates: 56772385-56774701 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1479 bp · LXL04_002738|LXL04_002738|OH1004|cDNA

ATGAGGACGAAAGTATTTGTATCAAGTTTTATACTATTGATGCAATTACAGATCATTTCCACCTCTCGATTATTGCAGACGGAGCCTTGTGAAACATTAAATATCCACTATTCCGGTAACGACTTGTATTACTTGAATGGTGAATTGGTAAATAAAGATTCGTTTTGCAAGTTTATCAAATTATACCATGCAAATCAATGCTTCATTAGTCGAAACCTCGTCAATCAATGCTTTGAGGAAGATCGTATTTTAGATGGTTT...

CDS

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1479 bp · LXL04_002738|LXL04_002738|OH1004|CDS

ATGAGGACGAAAGTATTTGTATCAAGTTTTATACTATTGATGCAATTACAGATCATTTCCACCTCTCGATTATTGCAGACGGAGCCTTGTGAAACATTAAATATCCACTATTCCGGTAACGACTTGTATTACTTGAATGGTGAATTGGTAAATAAAGATTCGTTTTGCAAGTTTATCAAATTATACCATGCAAATCAATGCTTCATTAGTCGAAACCTCGTCAATCAATGCTTTGAGGAAGATCGTATTTTAGATGGTTT...

Protein

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492 aa · LXL04_002738|LXL04_002738|OH1004|PROTEIN

MRTKVFVSSFILLMQLQIISTSRLLQTEPCETLNIHYSGNDLYYLNGELVNKDSFCKFIKLYHANQCFISRNLVNQCFEEDRILDGLHVEAGRRVLHDLVIKENKKTSFKPKYIAMGGTGMLLLCCTLLCPCFRSKRKDPDEAAIVKESNSLEKAPSVEMNSVSGKIPASPLRVPPSPGRFSMSPKLDRIGSVHLTMNQVARATQNFSPSLKLGEGGFGTVYKAQLQDGQLVAIKRASKEHFDALRGEFKSEIELLAKIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002738`
TK1151 ID	TkA04G366880
OH-1004 ID	LXL04_002738
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.667 / OH-1004 60.772 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002738

Location Chr01:56772385-56774701 (+)

Description Similar to CRCK3: Calmodulin-binding receptor-like cytoplasmic kinase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g11520`	Calmodulin-binding receptor-like cytoplasmic kinase 3.	No verified direct reference in this release
`At5g58940`	Calmodulin-binding receptor-like cytoplasmic kinase 1.	No verified direct reference in this release
`At4g00330`	Calmodulin-binding receptor-like cytoplasmic kinase 2.	No verified direct reference in this release
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002738 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009555 pollen development Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT2G11520

ath:AT3G46290

ath:AT4G00330

ath:AT5G58940

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.864

Rank 1 · LXL04_002738 · OH-1004

Cytoplasm0.091

Rank 2 · LXL04_002738 · OH-1004

Endoplasmic reticulum0.083

Rank 3 · LXL04_002738 · OH-1004

Nucleus0.060

Rank 4 · LXL04_002738 · OH-1004

Golgi apparatus0.024

Rank 5 · LXL04_002738 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr212-479 aa

PF00069.32Pkinase212-473 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002738	`PF07714.24`	PK_Tyr_Ser-Thr	212	479	1.1e-49	169.8
LXL04_002738	`PF00069.32`	Pkinase	212	473	3.6e-47	161.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ASQ5`	Arabidopsis thaliana	Calmodulin-binding receptor-like cytoplasmic kinase 3	55.378%	Swiss-Prot	strong database homology
`Q9FIL7`	Arabidopsis thaliana	Calmodulin-binding receptor-like cytoplasmic kinase 1	50.278%	Swiss-Prot	strong database homology
`Q8VZJ9`	Arabidopsis thaliana	Calmodulin-binding receptor-like cytoplasmic kinase 2	54.882%	Swiss-Prot	moderate database homology
`Q9FN92`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g59700	45.548%	Swiss-Prot	moderate database homology
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	46.667%	Swiss-Prot	moderate database homology

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