Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00231

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 634

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00231

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00231 Chr05 23840-24371060 Chr04 18932311-41076231 mixed High 34 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00231`	Chr05:23840-24371060	Chr04:18932311-41076231	mixed	634	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 634 · Showing 601–634 · Page 4/4

Previous Download All Anchors TSV

TkA05G082330 → LXL04_019743

99.3%

TkA05G082340 → LXL04_019744

99.1%

TkA05G082420 → LXL04_019746

99.0%

TkA05G082980 → LXL04_019750

100.0%

TkA05G083240 → LXL04_019751

99.1%

TkA05G083260 → LXL04_019752

95.9%

TkA05G083270 → LXL04_019753

100.0%

TkA05G083280 → LXL04_019754

99.5%

TkA05G083290 → LXL04_019755

99.8%

TkA05G083430 → LXL04_019758

98.1%

TkA05G083470 → LXL04_019758

79.5%

TkA05G083610 → LXL04_019761

98.9%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA05G082330`	`LXL04_019743`	`JCVI_TKOH_00231`	99.3	100.0 / 100.0	Strict
`TkA05G082340`	`LXL04_019744`	`JCVI_TKOH_00231`	99.1	92.521 / 79.147	Probable
`TkA05G082420`	`LXL04_019746`	`JCVI_TKOH_00231`	99.0	100.0 / 100.0	Strict
`TkA05G082980`	`LXL04_019750`	`JCVI_TKOH_00231`	100.0	100.0 / 100.0	Strict
`TkA05G083240`	`LXL04_019751`	`JCVI_TKOH_00231`	99.1	99.074 / 84.861	Strict
`TkA05G083260`	`LXL04_019752`	`JCVI_TKOH_00231`	95.9	100.0 / 100.0	Strict
`TkA05G083270`	`LXL04_019753`	`JCVI_TKOH_00231`	100.0	100.0 / 100.0	Strict
`TkA05G083280`	`LXL04_019754`	`JCVI_TKOH_00231`	99.5	100.0 / 100.0	Strict
`TkA05G083290`	`LXL04_019755`	`JCVI_TKOH_00231`	99.8	98.815 / 98.815	Complex
`TkA05G083430`	`LXL04_019758`	`JCVI_TKOH_00231`	98.1	100.0 / 97.59	Complex
`TkA05G083470`	`LXL04_019758`	`JCVI_TKOH_00231`	79.5	100.0 / 100.0	Complex
`TkA05G083610`	`LXL04_019761`	`JCVI_TKOH_00231`	98.9	100.0 / 100.0	Strict
`TkA05G084410`	`LXL04_019764`	`JCVI_TKOH_00231`	94.3	100.0 / 100.0	Probable
`TkA05G084780`	`LXL04_019765`	`JCVI_TKOH_00231`	99.6	85.437 / 79.042	Complex
`TkA05G085810`	`LXL04_019772`	`JCVI_TKOH_00231`	74.2	100.0 / 100.0	Review
`TkA05G086030`	`LXL04_019777`	`JCVI_TKOH_00231`	77.2	50.893 / 13.648	Complex
`TkA05G086320`	`LXL04_019777`	`JCVI_TKOH_00231`	97.7	38.053 / 11.286	Complex
`TkA05G086800`	`LXL04_019780`	`JCVI_TKOH_00231`	99.7	100.0 / 100.0	Complex
`TkA05G087000`	`LXL04_019782`	`JCVI_TKOH_00231`	91.6	97.449 / 58.589	Complex
`TkA05G087010`	`LXL04_019782`	`JCVI_TKOH_00231`	98.8	100.0 / 100.0	Complex
`TkA05G087240`	`LXL04_019783`	`JCVI_TKOH_00231`	99.8	100.0 / 100.0	Complex
`TkA05G088570`	`LXL04_019804`	`JCVI_TKOH_00231`	100.0	100.0 / 100.0	Strict
`TkA05G088670`	`LXL04_019805`	`JCVI_TKOH_00231`	98.4	100.0 / 100.0	Strict
`TkA05G088680`	`LXL04_019806`	`JCVI_TKOH_00231`	98.9	100.0 / 100.0	Strict
`TkA05G088720`	`LXL04_019807`	`JCVI_TKOH_00231`	100.0	100.0 / 100.0	Strict
`TkA05G088840`	`LXL04_019809`	`JCVI_TKOH_00231`	99.2	49.801 / 100.0	Review
`TkA05G088870`	`LXL04_019811`	`JCVI_TKOH_00231`	97.4	100.0 / 100.0	Strict
`TkA05G089010`	`LXL04_019813`	`JCVI_TKOH_00231`	98.3	99.309 / 28.909	Review
`TkA05G089090`	`LXL04_019814`	`JCVI_TKOH_00231`	98.0	99.509 / 81.092	Strict
`TkA05G089340`	`LXL04_019815`	`JCVI_TKOH_00231`	92.1	100.0 / 100.0	Probable
`TkA05G089380`	`LXL04_019816`	`JCVI_TKOH_00231`	98.2	100.0 / 100.0	Strict
`TkA05G089610`	`LXL04_019818`	`JCVI_TKOH_00231`	98.3	100.0 / 100.0	Strict
`TkA05G090200`	`LXL04_019822`	`JCVI_TKOH_00231`	100.0	100.0 / 96.784	Complex
`TkA05G090210`	`LXL04_019823`	`JCVI_TKOH_00231`	99.2	95.926 / 71.944	Complex