Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

TkA01G624900

Matched alias: TkA01G624900

Query type

Gene ID

Crosswalk plus synteny evidence

Resolved gene

TkA01G624900

TK1151 · GWHBCHF00000002:157738653-157741276 (-)

Linked evidence

2 / 1 / 496

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00037

The query resolves to a rubber dandelion gene. Gene-level crosswalk is shown first, followed by block and anchor evidence.

Gene ID Converter Gene Card Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00037 Chr01 147269835-162524362 Chr01 135159-15099463 mixed High 96 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

Input	Query gene	Target gene	Block	Identity	Coverage	RBH	Confidence
`TkA01G624900`	`LXL04_000258` OH1004 Chr01:4829778-4832930	`TkA01G624900` TK1151 Chr01:157738653-157741276	`JCVI_TKOH_00037`	99.8	96.737 / 100.0	1	Complex
`TkA01G624900`	`TkA01G624900` TK1151 Chr01:157738653-157741276	`LXL04_000258` OH1004 Chr01:4829778-4832930	`JCVI_TKOH_00037`	99.8	100.0 / 96.737	1	Complex

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00037`	Chr01:147269835-162524362	Chr01:135159-15099463	mixed	496	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 496 · Showing 401–496 · Page 3/3

Previous Download All Anchors TSV

TkA01G630790 → LXL04_000156

97.5%

TkA01G630840 → LXL04_000155

99.0%

TkA01G630850 → LXL04_000153

99.6%

TkA01G630880 → LXL04_000152

97.1%

TkA01G630900 → LXL04_000151

100.0%

TkA01G630930 → LXL04_000148

64.2%

TkA01G630940 → LXL04_000149

99.7%

TkA01G630950 → LXL04_000148

98.6%

TkA01G630960 → LXL04_000147

99.5%

TkA01G631070 → LXL04_000144

97.7%

TkA01G631080 → LXL04_000143

100.0%

TkA01G631390 → LXL04_000141

88.6%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA01G630790`	`LXL04_000156`	`JCVI_TKOH_00037`	97.5	87.166 / 64.143	Review
`TkA01G630840`	`LXL04_000155`	`JCVI_TKOH_00037`	99.0	100.0 / 100.0	Complex
`TkA01G630850`	`LXL04_000153`	`JCVI_TKOH_00037`	99.6	99.58 / 45.841	Review
`TkA01G630880`	`LXL04_000152`	`JCVI_TKOH_00037`	97.1	100.0 / 100.0	Strict
`TkA01G630900`	`LXL04_000151`	`JCVI_TKOH_00037`	100.0	98.778 / 93.449	Complex
`TkA01G630930`	`LXL04_000148`	`JCVI_TKOH_00037`	64.2	98.148 / 50.237	Complex
`TkA01G630940`	`LXL04_000149`	`JCVI_TKOH_00037`	99.7	100.0 / 100.0	Review
`TkA01G630950`	`LXL04_000148`	`JCVI_TKOH_00037`	98.6	100.0 / 100.0	Review
`TkA01G630960`	`LXL04_000147`	`JCVI_TKOH_00037`	99.5	100.0 / 100.0	Strict
`TkA01G631070`	`LXL04_000144`	`JCVI_TKOH_00037`	97.7	100.0 / 100.0	Strict
`TkA01G631080`	`LXL04_000143`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Complex
`TkA01G631390`	`LXL04_000141`	`JCVI_TKOH_00037`	88.6	92.308 / 47.917	Complex
`TkA01G631500`	`LXL04_000139`	`JCVI_TKOH_00037`	99.8	99.089 / 89.691	Strict
`TkA01G631550`	`LXL04_000136`	`JCVI_TKOH_00037`	94.6	100.0 / 91.258	Complex
`TkA01G631760`	`LXL04_000134`	`JCVI_TKOH_00037`	98.4	100.0 / 100.0	Strict
`TkA01G632230`	`LXL04_000130`	`JCVI_TKOH_00037`	87.3	92.889 / 98.911	Complex
`TkA01G632400`	`LXL04_000129`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G632410`	`LXL04_000128`	`JCVI_TKOH_00037`	98.3	100.0 / 100.0	Strict
`TkA01G632420`	`LXL04_000127`	`JCVI_TKOH_00037`	100.0	88.384 / 84.541	Strict
`TkA01G632470`	`LXL04_000126`	`JCVI_TKOH_00037`	100.0	100.0 / 37.762	Review
`TkA01G632490`	`LXL04_000125`	`JCVI_TKOH_00037`	98.8	86.207 / 47.438	Review
`TkA01G632500`	`LXL04_000125`	`JCVI_TKOH_00037`	100.0	96.207 / 52.941	Review
`TkA01G632550`	`LXL04_000124`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G632620`	`LXL04_000123`	`JCVI_TKOH_00037`	85.3	100.0 / 100.0	Review
`TkA01G632680`	`LXL04_000122`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G632700`	`LXL04_000121`	`JCVI_TKOH_00037`	100.0	84.496 / 61.932	Complex
`TkA01G632710`	`LXL04_000120`	`JCVI_TKOH_00037`	100.0	100.0 / 80.159	Complex
`TkA01G632900`	`LXL04_000119`	`JCVI_TKOH_00037`	99.7	100.0 / 100.0	Strict
`TkA01G633700`	`LXL04_000115`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G633710`	`LXL04_000114`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G633730`	`LXL04_000113`	`JCVI_TKOH_00037`	98.8	100.0 / 100.0	Complex
`TkA01G634000`	`LXL04_000112`	`JCVI_TKOH_00037`	99.3	100.0 / 100.0	Strict
`TkA01G634050`	`LXL04_000110`	`JCVI_TKOH_00037`	91.5	85.204 / 91.146	Complex
`TkA01G634140`	`LXL04_000109`	`JCVI_TKOH_00037`	98.7	100.0 / 65.517	Complex
`TkA01G634270`	`LXL04_000108`	`JCVI_TKOH_00037`	97.6	100.0 / 100.0	Strict
`TkA01G634290`	`LXL04_000107`	`JCVI_TKOH_00037`	98.0	100.0 / 67.727	Review
`TkA01G634300`	`LXL04_000106`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Complex
`TkA01G634310`	`LXL04_000105`	`JCVI_TKOH_00037`	92.6	92.609 / 68.354	Review
`TkA01G634330`	`LXL04_000104`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G634380`	`LXL04_000102`	`JCVI_TKOH_00037`	100.0	99.684 / 99.684	Strict
`TkA01G634450`	`LXL04_000101`	`JCVI_TKOH_00037`	100.0	98.726 / 63.265	Review
`TkA01G634550`	`LXL04_000099`	`JCVI_TKOH_00037`	99.6	100.0 / 100.0	Strict
`TkA01G634700`	`LXL04_000086`	`JCVI_TKOH_00037`	67.0	91.453 / 32.951	Complex
`TkA01G635080`	`LXL04_000096`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Complex
`TkA01G635150`	`LXL04_000093`	`JCVI_TKOH_00037`	79.5	74.667 / 48.052	Complex
`TkA01G635210`	`LXL04_000090`	`JCVI_TKOH_00037`	100.0	76.596 / 31.672	Review
`TkA01G635650`	`LXL04_000086`	`JCVI_TKOH_00037`	92.6	99.697 / 96.562	Probable
`TkA01G635700`	`LXL04_000084`	`JCVI_TKOH_00037`	99.0	100.0 / 100.0	Strict
`TkA01G635940`	`LXL04_000083`	`JCVI_TKOH_00037`	99.9	100.0 / 100.0	Strict
`TkA01G635970`	`LXL04_000082`	`JCVI_TKOH_00037`	97.1	14.407 / 13.281	Review
`TkA01G635990`	`LXL04_000081`	`JCVI_TKOH_00037`	95.5	100.0 / 100.0	Strict
`TkA01G636020`	`LXL04_000080`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G636030`	`LXL04_000079`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G636060`	`LXL04_000078`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G636210`	`LXL04_000077`	`JCVI_TKOH_00037`	59.7	100.0 / 100.0	Complex
`TkA01G636220`	`LXL04_000077`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Complex
`TkA01G636440`	`LXL04_000076`	`JCVI_TKOH_00037`	90.6	99.731 / 86.752	Probable
`TkA01G636790`	`LXL04_000074`	`JCVI_TKOH_00037`	98.3	100.0 / 100.0	Strict
`TkA01G636920`	`LXL04_000073`	`JCVI_TKOH_00037`	95.5	100.0 / 50.906	Review
`TkA01G636950`	`LXL04_000072`	`JCVI_TKOH_00037`	94.7	100.0 / 100.0	Probable
`TkA01G637580`	`LXL04_000067`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G637910`	`LXL04_000063`	`JCVI_TKOH_00037`	98.4	100.0 / 100.0	Strict
`TkA01G637940`	`LXL04_000062`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Review
`TkA01G637950`	`LXL04_000061`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G637970`	`LXL04_000060`	`JCVI_TKOH_00037`	99.6	100.0 / 65.075	Complex
`TkA01G638000`	`LXL04_000059`	`JCVI_TKOH_00037`	99.5	100.0 / 100.0	Review
`TkA01G638010`	`LXL04_000054`	`JCVI_TKOH_00037`	85.3	97.555 / 54.839	Complex
`TkA01G638130`	`LXL04_000057`	`JCVI_TKOH_00037`	98.6	81.765 / 32.553	Complex
`TkA01G638200`	`LXL04_000054`	`JCVI_TKOH_00037`	99.0	63.636 / 14.113	Complex
`TkA01G638210`	`LXL04_000054`	`JCVI_TKOH_00037`	99.5	98.217 / 81.452	Complex
`TkA01G638400`	`LXL04_000053`	`JCVI_TKOH_00037`	95.8	88.11 / 90.675	Strict
`TkA01G638430`	`LXL04_000052`	`JCVI_TKOH_00037`	100.0	100.0 / 80.69	Complex
`TkA01G638640`	`LXL04_000053`	`JCVI_TKOH_00037`	77.6	39.726 / 18.65	Complex
`TkA01G638760`	`LXL04_000049`	`JCVI_TKOH_00037`	91.6	99.688 / 95.95	Complex
`TkA01G638790`	`LXL04_000048`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G639430`	`LXL04_000044`	`JCVI_TKOH_00037`	100.0	95.283 / 100.0	Strict
`TkA01G640070`	`LXL04_000041`	`JCVI_TKOH_00037`	100.0	82.278 / 82.019	Strict
`TkA01G640380`	`LXL04_000039`	`JCVI_TKOH_00037`	99.4	94.653 / 72.097	Probable
`TkA01G640400`	`LXL04_000038`	`JCVI_TKOH_00037`	92.9	100.0 / 100.0	Probable
`TkA01G640420`	`LXL04_000037`	`JCVI_TKOH_00037`	51.3	93.636 / 27.83	Complex
`TkA01G640430`	`LXL04_000034`	`JCVI_TKOH_00037`	98.3	100.0 / 100.0	Strict
`TkA01G640530`	`LXL04_000028`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Complex
`TkA01G640540`	`LXL04_000027`	`JCVI_TKOH_00037`	99.4	99.686 / 81.491	Strict
`TkA01G640710`	`LXL04_000027`	`JCVI_TKOH_00037`	97.8	100.0 / 35.476	Review
`TkA01G640720`	`LXL04_000025`	`JCVI_TKOH_00037`	93.6	86.1 / 92.913	Probable
`TkA01G640740`	`LXL04_000024`	`JCVI_TKOH_00037`	100.0	100.0 / 45.805	Review
`TkA01G640770`	`LXL04_000023`	`JCVI_TKOH_00037`	99.7	100.0 / 100.0	Strict
`TkA01G640780`	`LXL04_000022`	`JCVI_TKOH_00037`	100.0	100.0 / 90.909	Complex
`TkA01G640850`	`LXL04_000021`	`JCVI_TKOH_00037`	96.3	100.0 / 78.598	Complex
`TkA01G640860`	`LXL04_000020`	`JCVI_TKOH_00037`	98.9	100.0 / 100.0	Review
`TkA01G641520`	`LXL04_000018`	`JCVI_TKOH_00037`	98.6	98.152 / 98.608	Strict
`TkA01G641640`	`LXL04_000017`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Strict
`TkA01G641990`	`LXL04_000014`	`JCVI_TKOH_00037`	100.0	100.0 / 100.0	Complex
`TkA01G642100`	`LXL04_000009`	`JCVI_TKOH_00037`	99.8	99.064 / 88.61	Review
`TkA01G642200`	`LXL04_000008`	`JCVI_TKOH_00037`	92.7	100.0 / 100.0	Complex
`TkA01G642220`	`LXL04_000007`	`JCVI_TKOH_00037`	87.2	100.0 / 100.0	Complex