TkAUNG001040 | RubberDandelionOmics

Gene overview

TkAUNG001040

Reference: TK1151 Chr: ChrUn Coordinates: 249706-252190 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

936 bp · TkAUNG001040|TK1151|cDNA

ATGGTAAGAGTGGTCGAAGAGTCGACAATGGCAATAGTAGAGAGCTGGTTCAGAGGGAAGAAGGCAACTAATGGGAGTTTAGTTAGTGTGGATCAAAATCTGATCAAGGAAGCTACTATAAAGAATGGAGGTGGGTGGCATGGACTTGGATGGCTTGGGCAGGGTGAGTGGGTCGTGCAGAGATCGAATATTGCCTCAGATGGAACATGTTGTGCTTGTCGTGAGCAGTTGGTTTGTGTTGATATTGATAGAGCAGAGAC...

CDS

Download CDS FASTA

936 bp · TkAUNG001040|TK1151|CDS

ATGGTAAGAGTGGTCGAAGAGTCGACAATGGCAATAGTAGAGAGCTGGTTCAGAGGGAAGAAGGCAACTAATGGGAGTTTAGTTAGTGTGGATCAAAATCTGATCAAGGAAGCTACTATAAAGAATGGAGGTGGGTGGCATGGACTTGGATGGCTTGGGCAGGGTGAGTGGGTCGTGCAGAGATCGAATATTGCCTCAGATGGAACATGTTGTGCTTGTCGTGAGCAGTTGGTTTGTGTTGATATTGATAGAGCAGAGAC...

Protein

Download Protein FASTA

311 aa · TkAUNG001040|TK1151|PROTEIN

MVRVVEESTMAIVESWFRGKKATNGSLVSVDQNLIKEATIKNGGGWHGLGWLGQGEWVVQRSNIASDGTCCACREQLVCVDIDRAETDKFAQSIASLAMERELQSNFKEFQDWLDQHSEYETVVDGANIGLYQQNFAEGGFSVVQLDAVVKEVYNNTKKWPLVVLHKKRVRSLLEDASKRELIEDWMDQGVLYGTPYGSNDDWYWLYASVKLKCLLVTNDEMRDHIFELLGSNFFSRWKERHQVRYTFVKGSLKLIMPPV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG001040`
TK1151 ID	TkAUNG001040
OH-1004 ID	LXL04_002530
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	50.500
Protein coverage (%)	TK1151 93.569 / OH-1004 39.484 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG001040

Location ChrUn:249706-252190 (+)

Description Similar to PRORP1: Proteinaceous RNase P 1, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16650`	Endonuclease RNase P responsible for the 5' maturation of tRNA precursors.	Nuclear Protein-Only Ribonuclease P2 Structure and Biochemical Characterization Provide Insight into the Conserved Properties of tRNA 5' End Processing Enzymes.2016 · DOI: 10.1016/j.jmb.2015.11.025
`At4g21900`	Endonuclease RNase P responsible for the 5' maturation of tRNA precursors.	No verified direct reference in this release
`At2g32230`	Endonuclease RNase P responsible for the 5' maturation of tRNA precursors.	A single Arabidopsis organellar protein has RNase P activity.2010 · DOI: 10.1038/nsmb.1812 Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.2012 · DOI: 10.1073/pnas.1209062109

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002530 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001682 tRNA 5'-leader removal Biological Process

GO:0006397 mRNA processing Biological Process

GO:0008033 tRNA processing Biological Process

GO:0043144 sno(s)RNA processing Biological Process

GO:0097745 mitochondrial tRNA 5'-end processing Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0030678 mitochondrial ribonuclease P complex Cellular Component

GO:0042645 mitochondrial nucleoid Cellular Component

GO:0004526 ribonuclease P activity Molecular Function

KEGG gene cross-reference

ath:AT2G16650

ath:AT2G32230

ath:AT4G21900

hsa:9692

rno:299050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.495

Rank 1 · TkAUNG001040 · TK1151

Cytoplasm0.421

Rank 2 · TkAUNG001040 · TK1151

Cell membrane0.073

Rank 3 · TkAUNG001040 · TK1151

Endoplasmic reticulum0.068

Rank 4 · TkAUNG001040 · TK1151

Golgi apparatus0.064

Rank 5 · TkAUNG001040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long2-23 aa

PF16953PRORP64-291 aa

PF11977RNase_Zc3h12a123-252 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG001040	`PF17177`	PPR_long	2	23	0.14	12.2
TkAUNG001040	`PF16953`	PRORP	64	291	8e-62	209.7
TkAUNG001040	`PF11977`	RNase_Zc3h12a	123	252	1.3e-05	25.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q680B9`	Arabidopsis thaliana	sp\|Q680B9\|PRRP2_ARATH Proteinaceous RNase P 2	57.800%	Swiss-Prot	High
`F4JKB6`	Arabidopsis thaliana	sp\|F4JKB6\|PRRP3_ARATH Proteinaceous RNase P 3	57.700%	Swiss-Prot	High
`Q66GI4`	Arabidopsis thaliana	sp\|Q66GI4\|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial	50.300%	Swiss-Prot	High

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