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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G153400
Reference: TK1151 Chr: Chr08 Coordinates: 40059190-40062385 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2356 bp · TkA08G153400|TK1151|cDNA

CTTTTTTCGACTACAATGACAATTTGTGTACCGATGTATTTAATGGATACATCGAATAAAAATTTATGTATAAATGTTTAATAACATAAATCTTAAACATCAATATCGAAATCTCAAACGTCCAAACCTGAAAACAAAATTGTGAGCTGAATGAAATTACTCGTAGAAAGTAAGTATTTGCCGCTGCATCACGCGAATAGAATGCTAGTATGACATAAGACAAAAGCACCAAGGCCTTAACAGATTGGACTCCTGTAATT...

CDS

Download CDS FASTA

1683 bp · TkA08G153400|TK1151|CDS

ATGGGGAGGGGAACGAGAGAAATAAATCCTGAGTTTTTGAAAATTGGGCTTGCTGTAGTTTTTTCTATTGGCGGGATGCTTTATACTTTTATCAGAAAGAAAAGGACCAATTCCTCTATATTTCCATCTGATCCTACTAAATCTCCAGGAAAGGAATCGCGGAGCTCAAAAAGCGAGCATCATGCATCCTATAGAACACAAAATTCATGCCAATTTGATCCTTTGGCAACTGATAAACATGAGGATTCGCAGAATTCCAG...

Protein

Download Protein FASTA

560 aa · TkA08G153400|TK1151|PROTEIN

MGRGTREINPEFLKIGLAVVFSIGGMLYTFIRKKRTNSSIFPSDPTKSPGKESRSSKSEHHASYRTQNSCQFDPLATDKHEDSQNSRLNADEDTYLLPEFYDLVKEFDTASMKTNTELPNPRVAKDDHEQEIKNLRNMVETLKEREKNLEIQLLEYYGLKEQETAFIELQNRLKLNNMEAKLLNLKIESLQTDNKRLQTQMADYTKVLADLEAAKAKIKVLQRKLRLETAQNKERILDLQQRVKKMQEDEHEDVIGIDPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G153400
TK1151 IDTkA08G153400
OH-1004 IDLXL04_032163
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G153400
LocationChr08:40059190-40062385 (+)
DescriptionSimilar to CHUP1: Protein CHUP1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g25690 Required for the positioning and movement of chloroplasts.
Chloroplast unusual positioning1 is essential for proper chloroplast positioning.2003 · DOI: 10.1105/tpc.016428
Chloroplast outer envelope protein CHUP1 is essential for chloroplast anchorage to the plasma membrane and chloroplast movement.2008 · DOI: 10.1104/pp.108.123075

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032163 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009902 chloroplast relocation Biological Process
GO:0030041 actin filament polymerization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009707 chloroplast outer membrane Cellular Component
GO:0005102 signaling receptor binding Molecular Function
GO:0005522 profilin binding Molecular Function
GO:0051015 actin filament binding Molecular Function
KEGG gene cross-reference
ath:AT3G25690
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.404
Rank 1 · TkA08G153400 · TK1151
Cytoplasm0.361
Rank 2 · TkA08G153400 · TK1151
Nucleus0.290
Rank 3 · TkA08G153400 · TK1151
Plastid0.070
Rank 4 · TkA08G153400 · TK1151
Endoplasmic reticulum0.059
Rank 5 · TkA08G153400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30381CEP135_N62-339 aa
PF13851GAS125-161 aa
PF04899MbeD_MobD128-152 aa
PF30907IPGA1_CC135-219 aa
PF01041DegT_DnrJ_EryC1147-261 aa
PF04899MbeD_MobD159-203 aa
PF13851GAS176-250 aa
PF04899MbeD_MobD202-248 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G153400PF30381CEP135_N623390.000619.6
TkA08G153400PF13851GAS1251619.76.2
TkA08G153400PF04899MbeD_MobD1281529.67.1
TkA08G153400PF30907IPGA1_CC1352190.0001123.2
TkA08G153400PF01041DegT_DnrJ_EryC11472610.739.7
TkA08G153400PF04899MbeD_MobD1592039.67.1
TkA08G153400PF13851GAS1762509.76.2
TkA08G153400PF04899MbeD_MobD2022489.67.1
TkA08G153400PF30907IPGA1_CC2182450.0001123.2
TkA08G153400PF30907IPGA1_CC2672960.0001123.2
TkA08G153400PF13851GAS2672999.76.2
TkA08G153400PF30907IPGA1_CC3073380.0001123.2
TkA08G153400PF04899MbeD_MobD3133369.67.1
TkA08G153400PF13851GAS3133659.76.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LI74Arabidopsis thalianasp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic39.600%Swiss-ProtMedium

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