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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G139510
Reference: TK1151 Chr: Chr08 Coordinates: 36270397-36272758 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1917 bp · TkA08G139510|TK1151|cDNA

AAATTTAAAAGGTGTCATCCTAAAAAATATTACAAAATTTCTAAAAGAAACTTAGAACTAAGGGGTGTCATGGGACACCCTTAGTCTATATGTGGCCTCGCACTGGTTAAAACTATTATATCAAAAAGTTCTACATATGAATACCGAAAATAAAGTGGATTCAAAACCCAACCGAATTTTTTTTGAACCCAAACCGAGAAAAATGTAAAGACCGCAAGATCAAACTCTTGTTGACCGAAAACAAACCCTTGACCGGTCCG...

CDS

Download CDS FASTA

1413 bp · TkA08G139510|TK1151|CDS

ATGAAGATCGAGATTATTAAACGGATTCGTTGGCAGACCCAGCGTACTTGCATCTGGACATGGCGCTCGAACCACGCATCATCGATCATCGACTTTCCTCATAACGAACCTTCAGATCATCAATTGCTGGTCCGTTCTCTTGAGGAATGCAAATTTTCAAATAATTCAACATCTCTTACTGGAACACACACAAGAATCATTAAACTCGGGTACCACAAATCTCCATCTCTCACATCACTTCTGGTTACTACATACATGTC...

Protein

Download Protein FASTA

471 aa · TkA08G139510|TK1151|PROTEIN

MKIEIIKRIRWQTQRTCIWTWRSNHASSIIDFPHNEPSDHQLLVRSLEECKFSNNSTSLTGTHTRIIKLGYHKSPSLTSLLVTTYMSFNLPTYARQLLDEIPYHNFNLLSSNSIIASSMKIGDIDSAKKIFRKMPKRDLVSWNSMIGGFVKNTKFQEAFRVFKKMLSTSNIEPDKFTFSSIITACARVGALHQANWIHSLLIEKKIQLNFILTSALIDMYSKCGQIETSKSIFESVRHEHDHVCVYNTMINGLAMHGLAM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G139510
TK1151 IDTkA08G139510
OH-1004 IDLXL04_031974
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)97.300
Protein coverage (%)TK1151 100.000 / OH-1004 86.486
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G139510
LocationChr08:36270397-36272758 (+)
DescriptionSimilar to PCMP-H59: Pentatricopeptide repeat-containing protein At5g50990
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g50990 Pentatricopeptide repeat-containing protein At5g50990. No verified direct reference in this release
At3g49170 May play a role in embryogenesis. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031974 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G62890
ath:AT4G21065
ath:AT4G37380
ath:AT5G50990
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.650
Rank 1 · TkA08G139510 · TK1151
Plastid0.166
Rank 2 · TkA08G139510 · TK1151
Nucleus0.048
Rank 3 · TkA08G139510 · TK1151
Cytoplasm0.035
Rank 4 · TkA08G139510 · TK1151
Cell membrane0.005
Rank 5 · TkA08G139510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14559TPR_1977-105 aa
PF00637Clathrin78-102 aa
PF01535PPR82-101 aa
PF23276TPR_2494-133 aa
PF13812PPR_3106-151 aa
PF24603TPR_30108-133 aa
PF17177PPR_long109-242 aa
PF13041PPR_2111-138 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G139510PF14559TPR_19771050.212.7
TkA08G139510PF00637Clathrin781020.02515.1
TkA08G139510PF01535PPR821017.5e-40133.1
TkA08G139510PF23276TPR_24941331.1e-1042.2
TkA08G139510PF13812PPR_31061517.3e-1761.9
TkA08G139510PF24603TPR_301081330.0002222.3
TkA08G139510PF17177PPR_long1092422.4e-1040.9
TkA08G139510PF13041PPR_21111382.7e-39133.8
TkA08G139510PF01535PPR1121387.5e-40133.1
TkA08G139510PF12854PPR_11171346.8e-29100.0
TkA08G139510PF14559TPR_191191380.212.7
TkA08G139510PF22330Rib_mS39_PPR1231520.2112.1
TkA08G139510PF12854PPR_11371656.8e-29100.0
TkA08G139510PF24603TPR_301372350.0002222.3
TkA08G139510PF13041PPR_21381872.7e-39133.8
TkA08G139510PF13812PPR_31381857.3e-1761.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FI49Arabidopsis thalianasp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g5099049.800%Swiss-ProtMedium
Q5G1T1Arabidopsis thalianasp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic39.500%Swiss-ProtMedium
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic38.900%Swiss-ProtMedium
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914238.500%Swiss-ProtMedium
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic39.400%Swiss-ProtMedium

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