Gene Card
Gene overview
cDNA / CDS / Protein Sequences
996 bp · TkA08G058820|TK1151|cDNA
ATGAAGACATCTTTCTTCACCATTGCTCTACTCTCCCTCACCATCTCCCTTTCTCTCCCATCCCTTTCTCTCTCCCAACGGTGCAACAAAAAAGACGAAAAAATCCTCTTCCGAATAAAAAAATCCTTCGGAAACCCTGATGTCCTGGCCACATGGACCAGAGACACCGACTGTTGTTCATGGTATTCAGTACAATGTGACGAGTACACCGACCGTATCAGTGCACTCACCATCTTCTCTGGCAACATCTCTGGCCACAT...
996 bp · TkA08G058820|TK1151|CDS
ATGAAGACATCTTTCTTCACCATTGCTCTACTCTCCCTCACCATCTCCCTTTCTCTCCCATCCCTTTCTCTCTCCCAACGGTGCAACAAAAAAGACGAAAAAATCCTCTTCCGAATAAAAAAATCCTTCGGAAACCCTGATGTCCTGGCCACATGGACCAGAGACACCGACTGTTGTTCATGGTATTCAGTACAATGTGACGAGTACACCGACCGTATCAGTGCACTCACCATCTTCTCTGGCAACATCTCTGGCCACAT...
Protein
Download Protein FASTA331 aa · TkA08G058820|TK1151|PROTEIN
MKTSFFTIALLSLTISLSLPSLSLSQRCNKKDEKILFRIKKSFGNPDVLATWTRDTDCCSWYSVQCDEYTDRISALTIFSGNISGHITEAIGNLPYLETLILRKLTNLTGQIPSSITKLTSLKTLTISWTNLSGPIPSFLSQIKSLASLDLSYNSFTGAIPPELSTLPKLRTLRLDRNRLTGSIPESFGNFTGRVPAIYLSHNLLNGTLPQTLGQVNFTWLDLSRNRFFGDLSVFFGTNKTIKAANFSRNMFEFNFSNLN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G058820 |
|---|---|
| TK1151 ID | TkA08G058820 |
| OH-1004 ID | LXL04_018404 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 99.399Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G058820 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:15048202-15049197 (-) | |||||||||
| Description | Similar to PGIP: Polygalacturonase inhibitor | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006952 defense response Biological Process GO:0007165 signal transduction Biological Process GO:0010228 vegetative to reproductive phase transition of meristem Biological Process GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process GO:0048574 long-day photoperiodism, flowering Biological Process GO:0005576 extracellular region Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0009506 plasmodesma Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G12145 ath:AT5G06860 ath:AT5G06870 vvi:100232865 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08263LRRNT_29-21 aaPF05725FNIP14-31 aaPF08263LRRNT_230-67 aaPF23211LRR_LRWD140-76 aaPF25019LRR_R13L1-DRL2157-104 aaPF13855LRR_878-132 aaPF00560LRR_180-94 aaPF12799LRR_484-108 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G058820 | PF08263 | LRRNT_2 | 9 | 21 | 2e-09 | 38.3 |
| TkA08G058820 | PF05725 | FNIP | 14 | 31 | 4.0 | 8.4 |
| TkA08G058820 | PF08263 | LRRNT_2 | 30 | 67 | 2e-09 | 38.3 |
| TkA08G058820 | PF23211 | LRR_LRWD1 | 40 | 76 | 0.18 | 12.2 |
| TkA08G058820 | PF25019 | LRR_R13L1-DRL21 | 57 | 104 | 0.0061 | 17.2 |
| TkA08G058820 | PF13855 | LRR_8 | 78 | 132 | 1e-12 | 48.3 |
| TkA08G058820 | PF00560 | LRR_1 | 80 | 94 | 8.4e-19 | 64.3 |
| TkA08G058820 | PF12799 | LRR_4 | 84 | 108 | 1.6e-08 | 35.3 |
| TkA08G058820 | PF23598 | LRR_14 | 86 | 184 | 8.2e-12 | 45.3 |
| TkA08G058820 | PF25019 | LRR_R13L1-DRL21 | 92 | 128 | 0.0061 | 17.2 |
| TkA08G058820 | PF25013 | LRR_Zer-1 | 95 | 133 | 0.082 | 13.8 |
| TkA08G058820 | PF00560 | LRR_1 | 97 | 119 | 8.4e-19 | 64.3 |
| TkA08G058820 | PF12799 | LRR_4 | 97 | 135 | 1.6e-08 | 35.3 |
| TkA08G058820 | PF24758 | LRR_At5g56370 | 107 | 129 | 0.037 | 14.4 |
| TkA08G058820 | PF05725 | FNIP | 110 | 119 | 4.0 | 8.4 |
| TkA08G058820 | PF24141 | LRR_ComC | 114 | 211 | 0.00035 | 21.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.