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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G410070
Reference: TK1151 Chr: Chr07 Coordinates: 103552002-103559887 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4829 bp · TkA07G410070|TK1151|cDNA

AATTCCCATCTCTATAAATCCTCCATCTCCCCCTCCCTCCCCCTCTTCTTTCCCCACTTTGAAGCGCTTCACTGTGTGTTTTTAGGTGCATGTACACTCGGTACATGTAGAAAAATGGCAAAACCTCGTAAGCAAAAGAATGAAGAACAGAAAGCTGAGAATTCGGAAGCTGTGGTAAAACATCAGAAGCTATGCCTCTCAATCGACCTCGATAAGCGTCGAATCTACGGGTATACAGAGCTTGAAGTAATTGTACCAGA...

CDS

Download CDS FASTA

4248 bp · TkA07G410070|TK1151|CDS

AATTCCCATCTCTATAAATCCTCCATCTCCCCCTCCCTCCCCCTCTTCTTTCCCCACTTTGAAGCGCTTCACTGTGTGTTTTTAGGTGCATGTACACTCGGTACATGTAGAAAAATGGCAAAACCTCGTAAGCAAAAGAATGAAGAACAGAAAGCTGAGAATTCGGAAGCTGTGGTAAAACATCAGAAGCTATGCCTCTCAATCGACCTCGATAAGCGTCGAATCTACGGGTATACAGAGCTTGAAGTAATTGTACCAGA...

Protein

Download Protein FASTA

1415 aa · TkA07G410070|TK1151|PROTEIN

NSHLYKSSISPSLPLFFPHFEALHCVFLGACTLGTCRKMAKPRKQKNEEQKAENSEAVVKHQKLCLSIDLDKRRIYGYTELEVIVPENGIVGLHADNLMIENVLVDGGPARFEIFPHYQQMDSDDRWCSVSSANSAADAAGSVYVSCLERELVPNLLIMCSNEVIKQAPEQSEQTVHENGTQTQTQTPIESKQNVKLIHIDYWVEKIETGIHIDKDVMHTNNQIRRARCWFPCMDDSSQRCSFDLEFTVANNLVAASTGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G410070
TK1151 IDTkA07G410070
OH-1004 IDLXL04_039887
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)69.400
Protein coverage (%)TK1151 4.382 / OH-1004 31.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G410070
LocationChr07:103552002-103559887 (-)
DescriptionSimilar to TMN1: Transmembrane 9 superfamily member 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g73960 TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039887 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006914 autophagy Biological Process
GO:0072657 protein localization to membrane Biological Process
GO:0000137 Golgi cis cisterna Cellular Component
GO:0000139 Golgi membrane Cellular Component
GO:0000421 autophagosome membrane Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005765 lysosomal membrane Cellular Component
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
GO:0005801 cis-Golgi network Cellular Component
GO:0005802 trans-Golgi network Cellular Component
KEGG gene cross-reference
ath:AT1G10950
hsa:10548
mmu:74140
pon:100173093
rno:361043
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.558
Rank 1 · TkA07G410070 · TK1151
Cytoplasm0.321
Rank 2 · TkA07G410070 · TK1151
Cell membrane0.136
Rank 3 · TkA07G410070 · TK1151
Endoplasmic reticulum0.059
Rank 4 · TkA07G410070 · TK1151
Golgi apparatus0.053
Rank 5 · TkA07G410070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10500SR-2540-55 aa
PF25316TAF2_3rd41-56 aa
PF17900Peptidase_M1_N60-110 aa
PF17900Peptidase_M1_N215-260 aa
PF01433Peptidase_M1331-508 aa
PF25316TAF2_3rd552-695 aa
PF13646HEAT_2697-760 aa
PF25577TPR_TAF2_C698-1026 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G410070PF10500SR-2540550.009716.2
TkA07G410070PF25316TAF2_3rd41562e-38132.2
TkA07G410070PF17900Peptidase_M1_N601100.007117.2
TkA07G410070PF17900Peptidase_M1_N2152600.007117.2
TkA07G410070PF01433Peptidase_M13315081.2e-0732.3
TkA07G410070PF25316TAF2_3rd5526952e-38132.2
TkA07G410070PF13646HEAT_26977603.2e-0524.8
TkA07G410070PF25577TPR_TAF2_C69810261.9e-42146.1
TkA07G410070PF13646HEAT_28078303.2e-0524.8
TkA07G410070PF13646HEAT_29119573.2e-0524.8
TkA07G410070PF10500SR-25112311530.009716.2
TkA07G410070PF25316TAF2_3rd113211542e-38132.2
TkA07G410070PF17900Peptidase_M1_N124512820.007117.2
TkA07G410070PF25316TAF2_3rd125912702e-38132.2
TkA07G410070PF10500SR-25125913710.009716.2
TkA07G410070PF25316TAF2_3rd129713252e-38132.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LPF0Arabidopsis thalianasp|Q8LPF0|TAF2_ARATH Transcription initiation factor TFIID subunit 258.300%Swiss-ProtHigh

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