TkA07G398720 | RubberDandelionOmics

Gene overview

TkA07G398720

Reference: TK1151 Chr: Chr07 Coordinates: 100175614-100177049 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

891 bp · TkA07G398720|TK1151|cDNA

ATGGCGGGTTCAGGTTCTTGCTCTACGTTTTCTCTCTCGAGGTTTGTTTCTCTGGAAACAGAGACTGCATTAGCAGAAGATGACGATGAAGATGAGGTAAATGCGTATGTACCTTCAGTCGAAGACGAAGAATATCTTCAGATTTTACTTAATAAAGAGAGAGATGGTTATCACATTCGGCCACCTGTAGATGATGGGCATAAAGTGGCTCGATCGGAAGCAATCCAATGGATAATCAATATAAGAGCACTTTTCCGATT...

CDS

Download CDS FASTA

891 bp · TkA07G398720|TK1151|CDS

ATGGCGGGTTCAGGTTCTTGCTCTACGTTTTCTCTCTCGAGGTTTGTTTCTCTGGAAACAGAGACTGCATTAGCAGAAGATGACGATGAAGATGAGGTAAATGCGTATGTACCTTCAGTCGAAGACGAAGAATATCTTCAGATTTTACTTAATAAAGAGAGAGATGGTTATCACATTCGGCCACCTGTAGATGATGGGCATAAAGTGGCTCGATCGGAAGCAATCCAATGGATAATCAATATAAGAGCACTTTTCCGATT...

Protein

Download Protein FASTA

296 aa · TkA07G398720|TK1151|PROTEIN

MAGSGSCSTFSLSRFVSLETETALAEDDDEDEVNAYVPSVEDEEYLQILLNKERDGYHIRPPVDDGHKVARSEAIQWIINIRALFRFRFRTAYLSVIYIDRFLSQGPIPSDKPWAIRLLPIACLSLAAKMVESKTPALSQYPAEEYKFESTTIRRMELLLSSALDWRMHSTTPFDYIYFFISRFRHESPNSRFLSLTTQIILATTKDINFVEHRSSTIAMAATLMVTDQKLTKESLEIKLKTAGLNRFLDHEDVYTCYCR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G398720`
TK1151 ID	TkA07G398720
OH-1004 ID	LXL04_030340
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G398720

Location Chr07:100175614-100177049 (-)

Description Similar to CYCD5-1: Cyclin-D5-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g37630`	Cyclin-D5-1.	No verified direct reference in this release
`At1g70210`	May activate cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0203800`	Cyclin-D5-3.	No verified direct reference in this release
`Os12g0588800`	Cyclin-D5-2.	No verified direct reference in this release
`Os08g0421100`	Cyclin-D1-2.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_030340 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000082 G1/S transition of mitotic cell cycle Biological Process

GO:0042023 DNA endoreduplication Biological Process

GO:0051301 cell division Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Molecular Function

KEGG gene cross-reference

ath:AT1G70210

ath:AT4G37630

dosa:Os03g0203800

dosa:Os03g0617500

osa:9271619

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.939

Rank 1 · TkA07G398720 · TK1151

Cytoplasm0.113

Rank 2 · TkA07G398720 · TK1151

Cell membrane0.024

Rank 3 · TkA07G398720 · TK1151

Endoplasmic reticulum0.016

Rank 4 · TkA07G398720 · TK1151

Plastid0.014

Rank 5 · TkA07G398720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00134Cyclin_N67-168 aa

PF00614PLDc147-229 aa

PF02984Cyclin_C172-264 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G398720	`PF00134`	Cyclin_N	67	168	3.1e-19	69.6
TkA07G398720	`PF00614`	PLDc	147	229	0.1	11.6
TkA07G398720	`PF02984`	Cyclin_C	172	264	1.1e-05	26.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q2V3B2`	Arabidopsis thaliana	sp\|Q2V3B2\|CCD51_ARATH Cyclin-D5-1	36.200%	Swiss-Prot	Medium
`P42751`	Arabidopsis thaliana	sp\|P42751\|CCD11_ARATH Cyclin-D1-1	44.000%	Swiss-Prot	Medium
`Q10QA2`	Oryza sativa subsp. japonica	sp\|Q10QA2\|CCD53_ORYSJ Cyclin-D5-3	37.500%	Swiss-Prot	Medium
`Q2QMW1`	Oryza sativa subsp. japonica	sp\|Q2QMW1\|CCD52_ORYSJ Cyclin-D5-2	39.300%	Swiss-Prot	Medium
`Q8H339`	Oryza sativa subsp. japonica	sp\|Q8H339\|CCD12_ORYSJ Cyclin-D1-2	39.100%	Swiss-Prot	Medium

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