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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G396800
Reference: TK1151 Chr: Chr07 Coordinates: 99680163-99687995 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5576 bp · TkA07G396800|TK1151|cDNA

ATATTATTATATTTTTTATATTAATATAAAAATCGACAGCGATATCGAACTGCAAAAGGGGGATACCATTACCCACCCACTTTATCAAGAACAAGGACGGATCCAAAATCGCGAATAACAGAAAACCCTAGCCTTGCTCCTTGGCCGCGAATTCCTTCTCTCTACACAACAAACCAACCAACCAACCAAACAACTTTATCCGCGCCAGGAAGATCCTGTGAGGAATTTGAAGATAGGGTTGTTAGGGGTTTTCAAAATTA...

CDS

Download CDS FASTA

3975 bp · TkA07G396800|TK1151|CDS

ATGCTGCATGGACGGTGGTGGTTTGGTGAAATGACCAAAGGACCATGTCAGGGGCTGAGGAAGATGATGGGTAGAAGTGCCAACGGAGGTTGCGGCACTGAGGAAAAACATTGCCCAGTTTCTATTTCTAGGGTTCCGACCAAGTTTTCACCGGAAGATAAAGACGCACCACTGGCTCGTCTAGTAGGTATAGATTTTTACGCCCAGGCTTGTAAGGCCCTTGCTGTTCTTTCCCCTTTCGATTTGGAGGATGGGCAGAA...

Protein

Download Protein FASTA

1324 aa · TkA07G396800|TK1151|PROTEIN

MLHGRWWFGEMTKGPCQGLRKMMGRSANGGCGTEEKHCPVSISRVPTKFSPEDKDAPLARLVGIDFYAQACKALAVLSPFDLEDGQKKSSAIVSTLPGGLASCLSKHSDSRKRHKKSHLGSDTKKNKSSSRQEKPRGNTFWSETEDYFRELKGDDIERLNEASSFRGNKFISIPYPGNNNETNNHSGVVVASGEDQDVNHSMEVDDTCTNEISNNQREDDTACSLPQSSSGVEWLLGSRSKTYLTSDRPSKKRKIIGGEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G396800
TK1151 IDTkA07G396800
OH-1004 IDLXL04_030316
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G396800
LocationChr07:99680163-99687995 (-)
DescriptionSimilar to Jade3: Protein Jade-3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030316 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001558 regulation of cell growth Biological Process
GO:0006275 regulation of DNA replication Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0051726 regulation of cell cycle Biological Process
GO:0060828 regulation of canonical Wnt signaling pathway Biological Process
GO:2000278 regulation of DNA biosynthetic process Biological Process
GO:0000123 histone acetyltransferase complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
KEGG gene cross-reference
mmu:382207
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.970
Rank 1 · TkA07G396800 · TK1151
Cytoplasm0.077
Rank 2 · TkA07G396800 · TK1151
Cell membrane0.029
Rank 3 · TkA07G396800 · TK1151
Endoplasmic reticulum0.013
Rank 4 · TkA07G396800 · TK1151
Plastid0.012
Rank 5 · TkA07G396800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13771zf-HC5HC2H278-310 aa
PF00130C1_1278-310 aa
PF13832zf-HC5HC2H_2279-310 aa
PF00628PHD280-326 aa
PF13831PHD_2293-327 aa
PF13771zf-HC5HC2H314-349 aa
PF02977CarbpepA_inh314-340 aa
PF00130C1_1320-329 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G396800PF13771zf-HC5HC2H2783103.9e-30104.6
TkA07G396800PF00130C1_12783100.006117.1
TkA07G396800PF13832zf-HC5HC2H_22793107.2e-39133.1
TkA07G396800PF00628PHD2803261.4e-0629.0
TkA07G396800PF13831PHD_22933271.9e-1556.8
TkA07G396800PF13771zf-HC5HC2H3143493.9e-30104.6
TkA07G396800PF02977CarbpepA_inh3143400.2811.8
TkA07G396800PF00130C1_13203290.006117.1
TkA07G396800PF13832zf-HC5HC2H_23394447.2e-39133.1
TkA07G396800PF13771zf-HC5HC2H3704613.9e-30104.6
TkA07G396800PF13831PHD_24014091.9e-1556.8
TkA07G396800PF00130C1_14024370.006117.1
TkA07G396800PF00628PHD4064481.4e-0629.0
TkA07G396800PF13831PHD_24234331.9e-1556.8
TkA07G396800PF29035DUF84944915397.1e-2277.9
TkA07G396800PF29035DUF84947767967.1e-2277.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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