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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G390150
Reference: TK1151 Chr: Chr07 Coordinates: 97863926-97865871 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1411 bp · TkA07G390150|TK1151|cDNA

GAAGGAAGTCAGTCGTAGATAAACGATCGCTCCACTACACTACCAATCGCCGTCGTAGATAGTTTTGCCGTCGACATGTTTACCGGCTTCAACGAGCTCATCAGCTTAAACTTCGCCCTTCAAAAACACTCACCTTCTACCGGAGCTATTTGGTACGCCGCCGGTCCTATAGCTGTACTCATGTTCGCCTCTCTTGTCTACTCAATTTCGTCCAAAAATAAGAAGGAATTGAACATCGGAAGGTATGATGATGTCTCGGT...

CDS

Download CDS FASTA

1071 bp · TkA07G390150|TK1151|CDS

ATGTTTACCGGCTTCAACGAGCTCATCAGCTTAAACTTCGCCCTTCAAAAACACTCACCTTCTACCGGAGCTATTTGGTACGCCGCCGGTCCTATAGCTGTACTCATGTTCGCCTCTCTTGTCTACTCAATTTCGTCCAAAAATAAGAAGGAATTGAACATCGGAAGGTATGATGATGTCTCGGTAGAGATTGCAGAGGCGGCCAGAGGCTCGTTTCAGAGATCTGATGACGACGAAGTTTCCTGGAAATCTGCAAGCGA...

Protein

Download Protein FASTA

356 aa · TkA07G390150|TK1151|PROTEIN

MFTGFNELISLNFALQKHSPSTGAIWYAAGPIAVLMFASLVYSISSKNKKELNIGRYDDVSVEIAEAARGSFQRSDDDEVSWKSASDVLFQEDNNDIISEADAKYAEEIQIQEALLASIFSSQTKTNASTSSLKTRSSLSSLLKTTESTETTCKICLENHEQWQMFKNPTCSHSFCYTCTSKHATTKIHESKNTITCPESNCKSTLDPYTLRQIIPKESLIKWDQHLCESMILESQKLYCPFADCSVLLINDDISITNID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G390150
TK1151 IDTkA07G390150
OH-1004 IDLXL04_030253
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)87.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G390150
LocationChr07:97863926-97865871 (+)
DescriptionSimilar to Arih1: E3 ubiquitin-protein ligase ARIH1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030253 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010431 seed maturation Biological Process
GO:0010476 gibberellin mediated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0039585 PKR/eIFalpha signaling Biological Process
GO:0140547 acquisition of seed longevity Biological Process
GO:0000151 ubiquitin ligase complex Cellular Component
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT2G26130
bta:508410
dre:405859
hsa:25820
mmu:23806
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.541
Rank 1 · TkA07G390150 · TK1151
Cytoplasm0.396
Rank 2 · TkA07G390150 · TK1151
Cell membrane0.097
Rank 3 · TkA07G390150 · TK1151
Endoplasmic reticulum0.078
Rank 4 · TkA07G390150 · TK1151
Lysosome / Vacuole0.040
Rank 5 · TkA07G390150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01485IBR151-182 aa
PF24921RING_XB3-XBAT31152-199 aa
PF22191IBR_1153-184 aa
PF00097zf-C3HC4153-198 aa
PF17123zf-RING_11153-179 aa
PF26200Rcat_RNF216170-184 aa
PF22605IBR_2170-182 aa
PF01485IBR186-206 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G390150PF01485IBR1511821.2e-1867.7
TkA07G390150PF24921RING_XB3-XBAT311521990.01416.2
TkA07G390150PF22191IBR_11531841.3e-0732.1
TkA07G390150PF00097zf-C3HC41531980.003118.1
TkA07G390150PF17123zf-RING_111531790.02614.9
TkA07G390150PF26200Rcat_RNF2161701840.0002422.3
TkA07G390150PF22605IBR_21701820.0005520.7
TkA07G390150PF01485IBR1862061.2e-1867.7
TkA07G390150PF22191IBR_11932041.3e-0732.1
TkA07G390150PF22605IBR_21972030.0005520.7
TkA07G390150PF01485IBR2222821.2e-1867.7
TkA07G390150PF26200Rcat_RNF2162352860.0002422.3
TkA07G390150PF22191IBR_12442791.3e-0732.1
TkA07G390150PF00097zf-C3HC42452640.003118.1
TkA07G390150PF24921RING_XB3-XBAT312542680.01416.2
TkA07G390150PF22605IBR_22592660.0005520.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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