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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G021030
Reference: TK1151 Chr: Chr07 Coordinates: 5705174-5713201 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2482 bp · TkA07G021030|TK1151|cDNA

AAAATAGCTTGAGATAGTTATGATAGTAAGCTAATAGCTAAGCTAAAAACCACTTCCCAAAGTTGCAGGATGAATTTGCCTCTAAAAAAGGCGCGCACCACAACCCAATAGTTCGCCGGCGTAAGTGAAATCTGCATATGAATCTTGGTGCCATATTAATCAGGTGGAGGTGCTCCCTATCTGGCTATCTGTTCCTCTTTTCTCGTCACCGGCGCCGCACCTTTTGCTCCCAGCGACACTCCTACGAATCACGCCCTTCA...

CDS

Download CDS FASTA

1392 bp · TkA07G021030|TK1151|CDS

ATGAATCTTGGTGCCATATTAATCAGGTGGAGGTGCTCCCTATCTGGCTATCTGTTCCTCTTTTCTCGTCACCGGCGCCGCACCTTTTGCTCCCAGCGACACTCCTACGAATCACGCCCTTCATTTCGTTCACTTTCACTGCAAAATCCATACGTTCATTATTACAACCCCAAAGCCTTTGCTGATACTTTATACAATTGCAATATCAGATTAACCAAGTTAGGTCGGTTTGGGAGAGTCCATGACGCTCGGAAACTGTT...

Protein

Download Protein FASTA

463 aa · TkA07G021030|TK1151|PROTEIN

MNLGAILIRWRCSLSGYLFLFSRHRRRTFCSQRHSYESRPSFRSLSLQNPYVHYYNPKAFADTLYNCNIRLTKLGRFGRVHDARKLFDEMPQRDIVSYVSMITVYIKNNDLFKAEALFYAIPERSIVADSAMIDAYAKAGRMDDACRLFDQMPRRNVYSWTSLISGYFRNGLVDEGQKLFDEMPGKNVVSWTSVILGYAHNGLIDQARAIFNQTPDKNVVVWTAMIKAYIDNFQTDEALNLFTSMPQRNLYSWNIMIQGC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G021030
TK1151 IDTkA07G021030
OH-1004 IDLXL04_006317
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)48.600
Protein coverage (%)TK1151 7.991 / OH-1004 40.217
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G021030
LocationChr07:5705174-5713201 (+)
DescriptionSimilar to PCMP-H82: Pentatricopeptide repeat-containing protein At3g62890
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g01060 Myb family transcription factor PHL7. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XYN9 Transcription factor binding to specific DNA sequences of target genes promoters, such as the motif R1BS 5'-NAKATNCN-3' and the motif P1BS 5'-GNATATNC-3' to trigger their expression (By similarity). No verified direct reference in this release
Os04g0665600 Transcription factor binding to specific DNA sequences of target genes promoters, such as the motif R1BS 5'-NAKATNCN-3' and the motif P1BS 5'-GNATATNC-3' to trigger their expression.
An SPX-RLI1 Module Regulates Leaf Inclination in Response to Phosphate Availability in Rice.2018 · DOI: 10.1105/tpc.17.00738
Modulation of nitrate-induced phosphate response by the MYB transcription factor RLI1/HINGE1 in the nucleus.2021 · DOI: 10.1016/j.molp.2020.12.005
UniProt: A2X0Q0 Transcription factor involved in phosphate starvation signaling. No verified direct reference in this release
Os02g0139000 Transcription factor involved in phosphate starvation signaling.
Integrative Comparison of the Role of the PHOSPHATE RESPONSE1 Subfamily in Phosphate Signaling and Homeostasis in Rice.2015 · DOI: 10.1104/pp.15.00736
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006317 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G05750
ath:AT1G31430
ath:AT3G05240
ath:AT3G62890
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.475
Rank 1 · TkA07G021030 · TK1151
Plastid0.321
Rank 2 · TkA07G021030 · TK1151
Nucleus0.094
Rank 3 · TkA07G021030 · TK1151
Cytoplasm0.067
Rank 4 · TkA07G021030 · TK1151
Peroxisome0.012
Rank 5 · TkA07G021030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_267-94 aa
PF01535PPR69-94 aa
PF12854PPR_176-90 aa
PF13428TPR_1476-90 aa
PF07719TPR_278-89 aa
PF24603TPR_3079-119 aa
PF23276TPR_2482-118 aa
PF22330Rib_mS39_PPR82-106 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G021030PF13041PPR_267944.7e-59197.0
TkA07G021030PF01535PPR69945.5e-71230.7
TkA07G021030PF12854PPR_176902.1e-47159.3
TkA07G021030PF13428TPR_1476906.1e-0627.1
TkA07G021030PF07719TPR_278893.38.8
TkA07G021030PF24603TPR_30791190.002518.9
TkA07G021030PF23276TPR_24821181.9e-0628.5
TkA07G021030PF22330Rib_mS39_PPR821062.4e-0628.2
TkA07G021030PF14559TPR_19831233.2e-0628.1
TkA07G021030PF11723Aromatic_hydrox871380.2211.8
TkA07G021030PF13812PPR_3921181.5e-0938.5
TkA07G021030PF13041PPR_2931294.7e-59197.0
TkA07G021030PF12854PPR_1931182.1e-47159.3
TkA07G021030PF24603TPR_30941790.002518.9
TkA07G021030PF01535PPR961245.5e-71230.7
TkA07G021030PF29070MSC6_N971170.3910.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SJW0Arabidopsis thalianasp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL764.000%Swiss-ProtHigh
A2XYN9Oryza sativa subsp. indicasp|A2XYN9|RLI1_ORYSI Myb family transcription factor RLI159.400%Swiss-ProtMedium
Q0J995Oryza sativa subsp. japonicasp|Q0J995|RLI1_ORYSJ Myb family transcription factor RLI159.400%Swiss-ProtMedium
A2X0Q0Oryza sativa subsp. indicasp|A2X0Q0|PHR3_ORYSI Protein PHOSPHATE STARVATION RESPONSE 364.000%Swiss-ProtLow
Q6YXZ4Oryza sativa subsp. japonicasp|Q6YXZ4|PHR3_ORYSJ Protein PHOSPHATE STARVATION RESPONSE 364.000%Swiss-ProtLow

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