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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G463020
Reference: TK1151 Chr: Chr06 Coordinates: 114594589-114595095 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

507 bp · TkA06G463020|TK1151|cDNA

ATGGGTATGTATATGGGTTTCAAAGACACGGGCATTTCCAAGTATATGCTCTACGTATGTTTTGTACTATGTTCCGTTCAGAACATCGTTCTATTTATTTTTCGACTCCTTCGCTTCTTTAATCCGATTCAATCCCACCACAATCATGATCGTCAAAAACAACATGAAAACAGTCCTCCGATTTCAGCTGTGTTGACTCGTGAATTCCTCGTAGTCAAAAACTTCAAGGACGTTCATAAGAGGAAAGATTTGTTGCAAAG...

CDS

Download CDS FASTA

507 bp · TkA06G463020|TK1151|CDS

ATGGGTATGTATATGGGTTTCAAAGACACGGGCATTTCCAAGTATATGCTCTACGTATGTTTTGTACTATGTTCCGTTCAGAACATCGTTCTATTTATTTTTCGACTCCTTCGCTTCTTTAATCCGATTCAATCCCACCACAATCATGATCGTCAAAAACAACATGAAAACAGTCCTCCGATTTCAGCTGTGTTGACTCGTGAATTCCTCGTAGTCAAAAACTTCAAGGACGTTCATAAGAGGAAAGATTTGTTGCAAAG...

Protein

Download Protein FASTA

168 aa · TkA06G463020|TK1151|PROTEIN

MGMYMGFKDTGISKYMLYVCFVLCSVQNIVLFIFRLLRFFNPIQSHHNHDRQKQHENSPPISAVLTREFLVVKNFKDVHKRKDLLQSCAVCLNKFSGDDKIRCLENCTHIFHLDCLDRWMDHDQGTCPICRTPVLPYECKDEYNRRLKVVVANSLHTSCGEDLPISSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G463020
TK1151 IDTkA06G463020
OH-1004 IDLXL04_022709
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)60.100
Protein coverage (%)TK1151 91.071 / OH-1004 95.625
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G463020
LocationChr06:114594589-114595095 (+)
DescriptionSimilar to BRH1: Brassinosteroid-responsive RING protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61460 May be involved in the brassinosteroids (BRs) signaling pathway and regulate the growth and development of rosette leaves.
Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana.2002 · DOI: 10.1007/s00425-001-0723-z
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.2018 · DOI: 10.1007/s11427-017-9133-8
At1g04360 RING-H2 finger protein ATL1. No verified direct reference in this release
At1g23980 RING-H2 finger protein ATL47. No verified direct reference in this release
At5g43420 RING-H2 finger protein ATL16. No verified direct reference in this release
At5g40250 RING-H2 finger protein ATL46. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022709 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009741 response to brassinosteroid Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0010200 response to chitin Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:1901371 regulation of leaf morphogenesis Biological Process
GO:1905421 regulation of plant organ morphogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G23980
ath:AT3G61460
ath:AT4G09100
ath:AT4G11360
ath:AT4G11370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.269
Rank 1 · TkA06G463020 · TK1151
Endoplasmic reticulum0.262
Rank 2 · TkA06G463020 · TK1151
Cell membrane0.247
Rank 3 · TkA06G463020 · TK1151
Cytoplasm0.235
Rank 4 · TkA06G463020 · TK1151
Nucleus0.163
Rank 5 · TkA06G463020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13832zf-HC5HC2H_219-24 aa
PF26452DUF813121-53 aa
PF13771zf-HC5HC2H73-116 aa
PF13832zf-HC5HC2H_281-116 aa
PF17120zf-RING_1685-128 aa
PF13920zf-C3HC4_386-134 aa
PF27108PHD_Pygo86-116 aa
PF22908PHD_NSD86-124 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G463020PF13832zf-HC5HC2H_219240.01316.4
TkA06G463020PF26452DUF813121530.2112.0
TkA06G463020PF13771zf-HC5HC2H731160.05914.3
TkA06G463020PF13832zf-HC5HC2H_2811160.01316.4
TkA06G463020PF17120zf-RING_16851280.0001721.8
TkA06G463020PF13920zf-C3HC4_3861340.0004620.6
TkA06G463020PF27108PHD_Pygo861160.02215.5
TkA06G463020PF22908PHD_NSD861240.08613.9
TkA06G463020PF13639zf-RING_2871311.9e-1144.8
TkA06G463020PF23555zf-RING_Vps41871230.02115.2
TkA06G463020PF21202SLX1_C871340.04814.7
TkA06G463020PF14446Prok-RING_1871180.2812.1
TkA06G463020PF17123zf-RING_11881162e-0731.3
TkA06G463020PF12678zf-rbx1881312.6e-0731.5
TkA06G463020PF12861zf-ANAPC11881323.1e-0731.0
TkA06G463020PF14634zf-RING_5881321.1e-0629.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9XF92Arabidopsis thalianasp|Q9XF92|BRH1_ARATH Brassinosteroid-responsive RING protein 140.500%Swiss-ProtMedium
P93823Arabidopsis thalianasp|P93823|ATL1_ARATH RING-H2 finger protein ATL137.100%Swiss-ProtMedium
Q8GW38Arabidopsis thalianasp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL4742.100%Swiss-ProtLow
Q9LSW9Arabidopsis thalianasp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL1646.900%Swiss-ProtLow
Q9FL07Arabidopsis thalianasp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL4654.500%Swiss-ProtLow

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