TkA06G054320 | RubberDandelionOmics

Gene overview

TkA06G054320

Reference: TK1151 Chr: Chr06 Coordinates: 14671060-14675275 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

666 bp · TkA06G054320|TK1151|cDNA

ATGGCTATATCACTGTTAGAAAGAACGAACAAGAAGATCGTCAATCGGGAATTCATTTTGGTACCTCAGTTTCCTCTGACGTACTCAACGTCACCATTGACGATGACGACTCAGTATCAAATGCCGCTCTTGATAAGCAGTCTTCTCGAGTTTTTTCCTGTTGCGAGTTATTTTGGAGCTGGAGGAGGAGTTAGGTTCCCGATTAATAACATTCCCGTCGACGATACCCTTGCTTGGGGTCGAACTGGTGGATTTGATAC...

CDS

Download CDS FASTA

666 bp · TkA06G054320|TK1151|CDS

ATGGCTATATCACTGTTAGAAAGAACGAACAAGAAGATCGTCAATCGGGAATTCATTTTGGTACCTCAGTTTCCTCTGACGTACTCAACGTCACCATTGACGATGACGACTCAGTATCAAATGCCGCTCTTGATAAGCAGTCTTCTCGAGTTTTTTCCTGTTGCGAGTTATTTTGGAGCTGGAGGAGGAGTTAGGTTCCCGATTAATAACATTCCCGTCGACGATACCCTTGCTTGGGGTCGAACTGGTGGATTTGATAC...

Protein

Download Protein FASTA

221 aa · TkA06G054320|TK1151|PROTEIN

MAISLLERTNKKIVNREFILVPQFPLTYSTSPLTMTTQYQMPLLISSLLEFFPVASYFGAGGGVRFPINNIPVDDTLAWGRTGGFDTSHSAARAYDRAAIKFRGNDADINFDLSDYAEDTGQPVASVDFSYNNLSGLVPGTGQFSYFNYTSFLDNPDLRGPYLGPCKDGMEVSGSLEEEVSESSTMASCQTTSTWRSAHDHGFNAEIQTLGEKTDHWEATG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G054320`
TK1151 ID	TkA06G054320
OH-1004 ID	LXL04_001928
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	66.700
Protein coverage (%)	TK1151 55.204 / OH-1004 96.694 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G054320

Location Chr06:14671060-14675275 (+)

Description Similar to SNZ: AP2-like ethylene-responsive transcription factor SNZ

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67180`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8AXC3`	Probable transcription factor (By similarity).	No verified direct reference in this release
`Os05g0121600`	Probable transcription factor (By similarity).	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator.2010 · DOI: 10.1104/pp.110.159517
`UniProt: B8B8J2`	Probable transcription factor (By similarity).	No verified direct reference in this release
`Os07g0235800`	Probable transcription factor (By similarity).	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.2016 · DOI: 10.3389/fpls.2016.01891

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001928 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0010581 regulation of starch biosynthetic process Biological Process

GO:0045824 negative regulation of innate immune response Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0080050 regulation of seed development Biological Process

GO:1905392 plant organ morphogenesis Biological Process

GO:2000014 regulation of endosperm development Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT2G28550

ath:AT2G39250

dosa:Os07g0235800

osa:4342787

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.390

Rank 1 · TkA06G054320 · TK1151

Cytoplasm0.315

Rank 2 · TkA06G054320 · TK1151

Cell membrane0.176

Rank 3 · TkA06G054320 · TK1151

Endoplasmic reticulum0.142

Rank 4 · TkA06G054320 · TK1151

Extracellular0.083

Rank 5 · TkA06G054320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP283-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G054320	`PF00847`	AP2	83	105	0.096	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FH95`	Arabidopsis thaliana	sp\|Q9FH95\|TOE3_ARATH AP2-like ethylene-responsive transcription factor TOE3	77.500%	Swiss-Prot	Low
`B8AXC3`	Oryza sativa subsp. indica	sp\|B8AXC3\|AP21_ORYSI APETALA2-like protein 1	80.000%	Swiss-Prot	Low
`Q2TQ34`	Oryza sativa subsp. japonica	sp\|Q2TQ34\|AP21_ORYSJ APETALA2-like protein 1	80.000%	Swiss-Prot	Low
`B8B8J2`	Oryza sativa subsp. indica	sp\|B8B8J2\|AP23_ORYSI APETALA2-like protein 3	77.500%	Swiss-Prot	Low
`Q8H443`	Oryza sativa subsp. japonica	sp\|Q8H443\|AP23_ORYSJ APETALA2-like protein 3	77.500%	Swiss-Prot	Low

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